Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_C23
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666... 335 1e-92
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 32 0.34
08_02_0840 + 21715077-21716962,21717541-21717814,21718265-21718579 30 1.8
05_04_0322 + 20239793-20240127,20240176-20240728,20241317-202414... 29 2.4
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159... 29 3.1
02_05_1269 + 35352825-35352888,35353645-35353968,35355062-353551... 29 4.1
08_02_0478 + 17621678-17623768 28 5.5
05_05_0311 - 24004380-24004440,24004685-24004756,24004875-240049... 28 5.5
01_07_0132 - 41298184-41298558,41298648-41298729,41298850-412989... 28 5.5
08_01_0346 - 3063440-3064189 28 7.2
05_04_0096 - 17931061-17931435,17931539-17931620,17932319-179324... 28 7.2
11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090 27 9.6
>07_03_1220 -
24966169-24966327,24966421-24966552,24966639-24966693,
24967496-24967667,24967771-24967918,24968015-24968050
Length = 233
Score = 335 bits (824), Expect = 1e-92
Identities = 164/195 (84%), Positives = 175/195 (89%)
Frame = +2
Query: 56 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 235
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 7 ISKKRKFVADGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 66
Query: 236 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 415
RIRELTSVVQKRFN PE VELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLR
Sbjct: 67 RIRELTSVVQKRFNFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 126
Query: 416 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 595
F+MESGA+GCEV+VSGKLR QRAKSMKF DG MI SG P N Y+++A RHVLLRQGVLGI
Sbjct: 127 FVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGYPVNLYIDSAVRHVLLRQGVLGI 186
Query: 596 KVKIMLPWDXQGKNG 640
KVKIML WD +GK G
Sbjct: 187 KVKIMLDWDPKGKQG 201
>08_01_0892 -
8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 32.3 bits (70), Expect = 0.34
Identities = 17/76 (22%), Positives = 37/76 (48%)
Frame = -3
Query: 586 YSLSEKHMSGSSVDVIITRVSRVDHESIYKLH*FGTLTTQLARYNNFTTTGTRFHDETEN 407
+ L++ + GS +++ T V R D +++Y+ G ++ +NN +++G HD N
Sbjct: 739 FKLNQVCIDGSRDELLETDVIRQDIKALYQSIDMGLVSEATVCFNNVSSSGLSVHDTGGN 798
Query: 406 TIASTTYSETSDKLVS 359
I ++ +S
Sbjct: 799 VIGQGDQDSEKNRYLS 814
>08_02_0840 + 21715077-21716962,21717541-21717814,21718265-21718579
Length = 824
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Frame = -2
Query: 539 HYKGLQSGS*VHL-QTSLIWHVDHA-----ACQIQQLHNH 438
HY GS + + +TSL+WH + A +CQ ++L +H
Sbjct: 657 HYSDATDGSYIEVKETSLVWHYEEADPDFGSCQAKELQDH 696
>05_04_0322 +
20239793-20240127,20240176-20240728,20241317-20241425,
20244456-20244723,20244943-20245197,20245594-20246539
Length = 821
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +1
Query: 313 GGYSWSLRYRPG-RISKIQAYRRSRCTSCLLWC 408
G SWS RY+ ISK Y RC C++ C
Sbjct: 665 GALSWSRRYQIAIGISKGLPYLHERCRDCIIHC 697
>07_01_0214 +
1595917-1596526,1597127-1597140,1598414-1598743,
1598853-1598963,1599113-1599269,1603366-1603619,
1603762-1603960,1604341-1604498
Length = 610
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -2
Query: 497 TSLIWHVDHAACQIQQLHNHGHQIP**NGEHHSKH 393
T L H AA Q H HGH G HHSKH
Sbjct: 247 TPLALHQAAAAAGPSQYHGHGHPHH-GGGHHHSKH 280
>02_05_1269 +
35352825-35352888,35353645-35353968,35355062-35355183,
35355361-35355482,35355651-35355755,35356402-35356765,
35357181-35357321,35357619-35359109
Length = 910
Score = 28.7 bits (61), Expect = 4.1
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Frame = -3
Query: 280 NVESLLYYGSQLTDSASFLSEHTLCPGGHNNDLRADGSDPH--FHAGVAVLGQLPSEELI 107
NVE++ + + S + E + P GH ++ D SD + F V L E
Sbjct: 337 NVEAVQRSAAAVVQSLQEIEEDSPTPSGHGSEDAGDVSDAYDKFKDAVIEAENLRHEAYE 396
Query: 106 EFRLENPISNKFSLL*NIVHGHDCNGSREKKHR 8
E R + + I + + + RE +HR
Sbjct: 397 ETRRRQKVERDLADATRIANEAESSQQREARHR 429
>08_02_0478 + 17621678-17623768
Length = 696
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +2
Query: 494 KFVDGLMIHSGDPCNDYVNTATRHVLLRQGVL 589
K + GL+IHSG ND+V+++ + + G++
Sbjct: 421 KQIHGLVIHSGFASNDFVSSSLIFMYSKSGII 452
>05_05_0311 -
24004380-24004440,24004685-24004756,24004875-24004946,
24005155-24005298,24005535-24005606,24006057-24006286
Length = 216
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -3
Query: 187 DLRADGSDPHFHAGVAVLGQLPSEELIEFRLENPISNKFSLL*NIVHGHDCNGS 26
DL H A +A L QL E+ +E PI +F L N++ CN +
Sbjct: 78 DLEEMNLSGHLSADLARLDQLQFMEIASNNIEGPIPPEFGNLENLISLDLCNNT 131
>01_07_0132 -
41298184-41298558,41298648-41298729,41298850-41298977,
41299059-41299157,41299279-41299434,41300709-41300783,
41301962-41302137,41303210-41303252,41303336-41303503,
41303584-41303731,41306316-41306587
Length = 573
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/75 (20%), Positives = 35/75 (46%)
Frame = +2
Query: 383 AVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATR 562
A R A G++ + + G G SG+ RGQ +++ ++G + +Y++ A
Sbjct: 472 AARLAAAGIVGILKKLGRDGSGAASSGRGRGQPRRTVVAIEGGLYQGYPVFREYLDEALV 531
Query: 563 HVLLRQGVLGIKVKI 607
+L + + +++
Sbjct: 532 EILGEEVARNVTLRV 546
>08_01_0346 - 3063440-3064189
Length = 249
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +2
Query: 347 AESLRYKLIGGLAVRRACYGVLR 415
A S L+GG A ACYGVLR
Sbjct: 221 ARSAARVLLGGWAAMAACYGVLR 243
>05_04_0096 -
17931061-17931435,17931539-17931620,17932319-17932446,
17932523-17932621,17932739-17932894,17934120-17934194,
17934582-17934749,17934825-17934993,17936640-17936923
Length = 511
Score = 27.9 bits (59), Expect = 7.2
Identities = 29/177 (16%), Positives = 72/177 (40%), Gaps = 2/177 (1%)
Frame = +2
Query: 86 GVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQ 265
GV+ E+ + +++AE+ V + + ++ ++ + +RE+ +++
Sbjct: 325 GVYLGEIARLVFQKMAEES-DIFGTAVDGLSTPFVLSTPNLAAIREDDSPDLREVGKILE 383
Query: 266 KRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARG- 442
+ +P+ V L K+ R I + A R A ++ + + G G
Sbjct: 384 EHLKLPD--VPLKTRKLVARVSDIITRR-----------AARLAAAAIVAILQKIGCDGT 430
Query: 443 -CEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIM 610
C +RG R +++ ++G + +Y+N A +L + + +++M
Sbjct: 431 LCGSTQVRTMRGVRRRTVVAIEGGLFEGYSVFREYLNEALVEILGEEIAATVSLRVM 487
>11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090
Length = 1037
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 527 LQSGS*VHLQTSLIWHVDHAACQIQQLHNHGH 432
+QSG+ LIWH+ + C+I+ H H
Sbjct: 753 IQSGAPRCSHVILIWHIATSLCEIKLAQEHDH 784
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,449,024
Number of Sequences: 37544
Number of extensions: 388748
Number of successful extensions: 1007
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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