Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_C22
(347 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 39 2e-04
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 37 8e-04
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 34 0.005
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 33 0.013
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha... 30 0.089
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 27 1.1
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 25 2.5
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 4.4
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 24 5.9
SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr 1|||... 24 5.9
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po... 24 7.8
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 39.1 bits (87), Expect = 2e-04
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = +3
Query: 12 IASEYNINSMPTFVFVKNGKKLDEFSGAN 98
IAS + +MPTFVF +NGK++D +GAN
Sbjct: 66 IASGLGVKAMPTFVFFENGKQIDMLTGAN 94
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 37.1 bits (82), Expect = 8e-04
Identities = 14/30 (46%), Positives = 23/30 (76%)
Frame = +3
Query: 9 DIASEYNINSMPTFVFVKNGKKLDEFSGAN 98
+IA+E +++MP+F KNG+K++E GAN
Sbjct: 62 EIAAEAGVHAMPSFFLYKNGEKIEEIVGAN 91
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 34.3 bits (75), Expect = 0.005
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 9 DIASEYNINSMPTFVFVKNGKKLDEFSG 92
D+ SEY+I PT KNGK++ ++SG
Sbjct: 85 DLCSEYSIRGYPTLNVFKNGKQISQYSG 112
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 33.1 bits (72), Expect = 0.013
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 9 DIASEYNINSMPTFVFVKNGKKLDEFSGAN 98
DIA +++N++P FV + K L SGAN
Sbjct: 64 DIAESFDVNAVPLFVLIHGAKVLARISGAN 93
>SPBC12D12.07c |trx2||mitochondrial thioredoxin
Trx2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 30.3 bits (65), Expect = 0.089
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 9 DIASEYNINSMPTFVFVKNGKKLDEFSGANV 101
DIA + + ++PT V + G++LD GA+V
Sbjct: 79 DIAQKNGVYALPTMVLFRKGQELDRIVGADV 109
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 26.6 bits (56), Expect = 1.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 95 SAREFVQFLAILNEDERRHRVDVVLAGDV 9
S+RE + F ++ ED R H DV L GD+
Sbjct: 874 SSREGLGFRELIPEDIRAHFEDVGLPGDI 902
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 25.4 bits (53), Expect = 2.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 264 NIFKFITDVKNIFSSFIKNVYMFFFF*FHLVSIGGC 157
N ++TD +NIF +F+ N + F L I C
Sbjct: 76 NSIDYLTDTQNIFPNFVNNENNYQFSTAPLNPIDAC 111
>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 541
Score = 24.6 bits (51), Expect = 4.4
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 273 LKINIFKFI-TDVKNIFSSFIKNVYMFFFF*FHLVSIGGCVQL 148
++I++ F+ T +++SS I NV M F + S+G CV L
Sbjct: 103 VQISLIAFVVTFGSSVYSSGIGNVSMDFGVSISVSSLGSCVFL 145
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 24.2 bits (50), Expect = 5.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 18 SEYNINSMPTFVFVKNGKKLD 80
S Y + P+F F+KNG K++
Sbjct: 175 SIYMLIGYPSFFFLKNGSKIE 195
>SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 252
Score = 24.2 bits (50), Expect = 5.9
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Frame = -1
Query: 155 YNFSLYLLVFKDS-CFEFVD-------VSAREFVQFLAILNEDERRHRVDVVL 21
Y+ ++++KD C E ++ +S RE +L +LN + R+D++L
Sbjct: 60 YDLEQRMIIYKDYLCIEKLEEDYVPGFLSFREIKWYLPLLNHIPHQFRIDIIL 112
>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 422
Score = 23.8 bits (49), Expect = 7.8
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Frame = -2
Query: 229 FFFIY*KRIHVFFF------LIPFSXHRRLRTTLVSIYLCLRIVVLSLSTLAPENSSSFL 68
FF + R +FFF L + H R + +I+L +IV ++LST S +++
Sbjct: 353 FFALILLRTAIFFFGTDRYSLPLYKTHARRFSLSTTIHLFKKIVRITLSTFI---SYTWI 409
Query: 67 PFL 59
PFL
Sbjct: 410 PFL 412
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,141,692
Number of Sequences: 5004
Number of extensions: 18954
Number of successful extensions: 63
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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