Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_C22
         (347 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.0  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   2.4  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   2.4  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   5.5  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   5.5  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    21   5.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   9.6  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -2

Query: 148 LVSIYLCLRIVVLSLSTLAPE 86
           LVSI +C+ +VVL++   +P+
Sbjct: 317 LVSISICVTVVVLNVHFRSPQ 337


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -2

Query: 148 LVSIYLCLRIVVLSLSTLAPE 86
           LVSI +C+ +VVL++   +P+
Sbjct: 317 LVSISICVTVVVLNVHFRSPQ 337


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -3

Query: 297 FAFQRXQTLKINIFKFITDVKNIFSSFIKNVYM 199
           F   + +T K+ I+K+   + +I  +  K V+M
Sbjct: 81  FLISQQKTSKLKIYKWNNQILHILWTSYKKVFM 113


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -3

Query: 297 FAFQRXQTLKINIFKFITDVKNIFSSFIKNVYM 199
           F   + +T K+ I+K+   + +I  +  K V+M
Sbjct: 64  FLISQQKTSKLKIYKWNNQILHILWTSYKKVFM 96


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +1

Query: 187 KKKKHVYVFNK*RKNVFNVCNEFE 258
           KKK+ +Y+F+    N+ +V +  +
Sbjct: 246 KKKRKIYLFSGHESNIASVLHALQ 269


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +1

Query: 187 KKKKHVYVFNK*RKNVFNVCNEFE 258
           KKK+ +Y+F+    N+ +V +  +
Sbjct: 261 KKKRKIYLFSGHESNIASVLHALQ 284


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 23  VQHQLDADVRLR*EWQETGRILWR*RRQTQNNY 121
           ++HQ D   +L+  W++   I  R RR+ +  Y
Sbjct: 20  IRHQSDRYSKLKRNWRKPKGIDNRVRRRFKGQY 52


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = +1

Query: 295 KKYWSCCNQ 321
           KKY+ CC++
Sbjct: 212 KKYYPCCDE 220


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,931
Number of Sequences: 438
Number of extensions: 1232
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)