Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_C20
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...   178   7e-46
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe...    27   2.4  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    26   5.5  
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz...    26   7.2  
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual             26   7.2  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    26   7.2  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   9.5  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score =  178 bits (434), Expect = 7e-46
 Identities = 96/213 (45%), Positives = 124/213 (58%), Gaps = 1/213 (0%)
 Frame = +1

Query: 109 GLNXLNQYLAEXSYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQIASYTSAERKT 285
           GL  LN +L + S++ GY PSQAD  VF+ VG AP  A  P+  RWY QIA+Y  A    
Sbjct: 11  GLKQLNDFLLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQIATYDLA---- 66

Query: 286 WSQGTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXLKAYADKKSK 465
               T P                     +DLFGS                 + Y  KK+ 
Sbjct: 67  ----TLPGTAKEVSAYGPEGAAAAEEDEIDLFGSDEEEDPEAERIKAERVAE-YNKKKAA 121

Query: 466 KPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCV 645
           KP  + KS + LDVKPWDDET M E+E  VR+I+M+GL+WG SKLVPVG+G+NK QI  V
Sbjct: 122 KPKAVHKSLVTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVGFGVNKFQINLV 181

Query: 646 IEDDKVSVDLLTEKIQEFEDFVQSVDIAAFNKI 744
           +EDDKVS++ L E+++ FED+VQS DIAA +K+
Sbjct: 182 VEDDKVSLEALQEELEGFEDYVQSTDIAAMSKL 214


>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 422

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -3

Query: 774 YKYITCYGCLDFVKCSNVNRLYKIFKFLNFFCQQINRNFVVLDDTHNLQFIYAI 613
           ++ ITC   LD +   N N +Y   + +      I ++   L D H   FIY I
Sbjct: 80  HRNITCIYDLDIINPYNFNEVYIYEELMEADLNAIIKSGQPLTDAHFQSFIYQI 133


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -3

Query: 597 FGGSPEKAFHFNSAYLVFHFLHIGFIIP-WLDIKENR 490
           FG S     HF+  Y VF    IG I P W++   N+
Sbjct: 485 FGNSYYNDHHFHYGYFVFTAAVIGHIDPDWINTGNNK 521


>SPBC646.14c |orc5||origin recognition complex subunit
           Orc5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 455

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 112 LNXLNQYLAEXSYVSGYTPSQADVQVF 192
           L+ +++YL   ++++ Y PS+ D Q F
Sbjct: 300 LSLVSKYLLVSAFLASYNPSRLDAQFF 326


>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 619 INKLQIMCVIEDDKVSVDLLTEKIQEFEDFVQSVDIAAFNK 741
           INK Q+M   E ++ ++DLL++   EF   + + D+    K
Sbjct: 151 INKWQVMTAFELNEENLDLLSQYCSEF--LIHAADVEGLCK 189


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/47 (25%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = +1

Query: 652 DDKVSVDLLTEKIQEFEDFVQSVDIAAFNK-I*TAITCNIFISATFS 789
           +++     + +K++ F+D + S+D + F+  + +AIT ++  +AT S
Sbjct: 404 EEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLS 450


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 311 PPVLNPRLPPQQRKTTMTT 367
           PPVL P LPP Q  T  T+
Sbjct: 449 PPVLLPTLPPIQTTTIQTS 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,930,249
Number of Sequences: 5004
Number of extensions: 56356
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)