Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_C20
(803 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L25599-6|AAA28051.1| 213|Caenorhabditis elegans Hypothetical pr... 205 2e-53
Z95559-20|CAB63360.2| 263|Caenorhabditis elegans Hypothetical p... 151 4e-37
Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical pr... 31 0.73
U42835-6|AAA83589.2| 816|Caenorhabditis elegans Dehydrogenases,... 30 2.2
AF106576-4|AAC78176.1| 473|Caenorhabditis elegans Hypothetical ... 29 2.9
Z78065-3|CAB01517.2| 406|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical pr... 28 6.8
>L25599-6|AAA28051.1| 213|Caenorhabditis elegans Hypothetical
protein F54H12.6 protein.
Length = 213
Score = 205 bits (501), Expect = 2e-53
Identities = 114/224 (50%), Positives = 140/224 (62%), Gaps = 4/224 (1%)
Frame = +1
Query: 85 VGSVKTAQGLNXLNQYLAEXSYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQIAS 261
V VK+ GL N LAE ++ +G+ S D Q+F +G AP A+ P+V RWY +AS
Sbjct: 2 VADVKSPAGLAAFNTTLAEQAFATGFVLSGEDAQLFAALGSAPNASTYPNVARWYANVAS 61
Query: 262 YTSAERKTWSQ--GTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXX 435
YT AERKTW+ G++P DLFGS
Sbjct: 62 YTDAERKTWASAGGSAPAAAAADGDDF------------DLFGSDDEEEDAEKAKIVEER 109
Query: 436 LKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGY 615
L AYA+KK+KK IAKSS++LDVKPWDDETD+ EME VR+IEM+GL+WG +KL+P+GY
Sbjct: 110 LAAYAEKKAKKAGPIAKSSVILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGY 169
Query: 616 GINKLQIMCVIEDDKVSVDLLTEKIQ-EFEDFVQSVDIAAFNKI 744
GI KLQI+ VIED KVSVD L EKI +FED VQSVDI AFNKI
Sbjct: 170 GIKKLQIITVIEDLKVSVDDLIEKITGDFEDHVQSVDIVAFNKI 213
>Z95559-20|CAB63360.2| 263|Caenorhabditis elegans Hypothetical
protein Y41E3.10a protein.
Length = 263
Score = 151 bits (367), Expect = 4e-37
Identities = 78/125 (62%), Positives = 90/125 (72%), Gaps = 1/125 (0%)
Frame = +1
Query: 373 DLFGSGXXXXXXXXXXXXXXXLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQ 552
DLFGS L AYA KK+ K IAKSS++LDVKPWDDETD+ EME
Sbjct: 139 DLFGSEDEEEDEEKKKVVEERLAAYAAKKATKAGPIAKSSVILDVKPWDDETDLGEMEKL 198
Query: 553 VRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEKIQ-EFEDFVQSVDIA 729
VR+IEM+GL+WG +KL+P+GYGI KLQI+ VIED KVSVD L EKI +FED VQSVDI
Sbjct: 199 VRSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDLKVSVDDLIEKITGDFEDHVQSVDIV 258
Query: 730 AFNKI 744
AFNKI
Sbjct: 259 AFNKI 263
>Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical
protein AC3.3 protein.
Length = 425
Score = 31.5 bits (68), Expect = 0.73
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -2
Query: 295 PETMFCVQPKCMKQFDYTIVVRGEG*RPAPCQLAQILEHQLEKECIQTRSFXQ 137
P + C QP CM + + VV+ PAP Q + Q +++C+QT+ Q
Sbjct: 124 PAPVQC-QPSCMPACEQSCVVQ----TPAPVQCVPQCQQQCQQQCVQTQPIQQ 171
>U42835-6|AAA83589.2| 816|Caenorhabditis elegans Dehydrogenases,
short chain protein27 protein.
Length = 816
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/66 (33%), Positives = 32/66 (48%)
Frame = +1
Query: 490 SILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSV 669
SI+L VKP DDE ++++ NQ M G LW A++ Y ++ I V V
Sbjct: 436 SIMLCVKPADDEI-VQKIRNQ-----MSGALWSAAQFAVTSYVCVRVLKFLYIMCKSVLV 489
Query: 670 DLLTEK 687
+T K
Sbjct: 490 HFITPK 495
>AF106576-4|AAC78176.1| 473|Caenorhabditis elegans Hypothetical
protein W07E6.2 protein.
Length = 473
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +1
Query: 565 EMEGLLWGASKLVPVGYGINKLQIMC----VIEDDKVSVDLLTEKIQEFEDFVQ 714
E E L G+ LVPV N+LQI+C DD V + T + E D ++
Sbjct: 14 EDENELGGSGILVPVDISTNELQILCNQLLGSSDDPVPISFFTTEGAEIVDSIR 67
>Z78065-3|CAB01517.2| 406|Caenorhabditis elegans Hypothetical
protein T09E8.4 protein.
Length = 406
Score = 28.7 bits (61), Expect = 5.1
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Frame = -3
Query: 540 FLHIGFIIPWLDIKENRGLGNESWFLRLLV-SICFQTFFSNSFSFCILFLVTRTK*INVV 364
FL+I I +K++ NE +R+LV +I FF S S +FL+ +T N
Sbjct: 291 FLYIAVIFKIFAMKKSTLNKNE---IRVLVQAIVIFVFFQASSS---VFLICQTIAFNTA 344
Query: 363 VIVVFRCWGGSRGFSTGGQWAGALRPCFAFSRSV*SNLIIPS*YVGKVSGRRLANLL 193
V + R +T +AGA PCF+F S ++ S + VS + +NL+
Sbjct: 345 TAFVIK-----RIINTLEIFAGAATPCFSFFTSKEIRKLLSS-KIAAVSSQGSSNLV 395
>Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical
protein AC3.4 protein.
Length = 425
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -2
Query: 295 PETMFCVQPKCMKQFDYTIVVRGEG*RPAPCQLAQILEHQLEKECIQTRSFXQ 137
P + C QP CM + + VV+ PA Q + Q +++C+QT+ Q
Sbjct: 124 PAPVQC-QPSCMPACEQSCVVQ----TPAAVQCVPQCQQQCQQQCVQTQPIQQ 171
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,489,061
Number of Sequences: 27780
Number of extensions: 328129
Number of successful extensions: 942
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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