Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_C18
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    32   0.11 
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    27   4.1  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    26   5.4  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    26   5.4  
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa...    26   7.1  
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz...    25   9.4  
SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.4  

>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 441 NVESCFFKAETLLPASAQSEQRRLLRAALISFISFWCSCFRD 316
           ++  C    +T+LPA+ Q+  +R+    L+  ++ WC   RD
Sbjct: 69  DLHECVLCVDTILPANLQTIAKRIFSLVLLPPLNDWCKQLRD 110


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +3

Query: 480 YIISKYYVKSIPFLMLGFVQNFTLFKISSDFNIFTATTALVNNVEAERSDDDIHYQPIGS 659
           Y+   Y   ++  L   +  NFT+F  +S  N+  A  AL + + A+ +     Y+P   
Sbjct: 127 YLEQTYCADNVSVLDFSYANNFTVF--ASQSNVEAAHLALASTLAAKAAPVIHVYEPDAI 184

Query: 660 IETS 671
           + T+
Sbjct: 185 VTTT 188


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 656 SNRLIMYVIIRPFCLYII 603
           +NR + YVI+  FCLY I
Sbjct: 292 ANRHLAYVIVAGFCLYFI 309


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/57 (22%), Positives = 22/57 (38%)
 Frame = -1

Query: 722 CILHNRRLPRNTSFVLK*CFY*SNRLIMYVIIRPFCLYIINQSCCGCKDIKITAYFK 552
           C  +  R+P     VLK  +Y  +       I+ F  Y +      C  +  + YF+
Sbjct: 497 CYENRERIPNELPMVLKQIYYSRSESFKPSAIKEFIEYFLCDQLMNCLSVYYSKYFE 553


>SPCC1259.07 |||transcriptional regulatory protein Rxt3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = +3

Query: 612 EAERSDDDIHYQPIGSIETSFQNKRGVPRQPSVMKNARGTVVIDTSVFNNPEHALSGL 785
           E E+S      +    IE +  N    P QPS +K + G+++  ++   +PE++ +G+
Sbjct: 7   ENEQSKKTFDPKDSMKIEETSTNGSSQPSQPSNIKLSIGSILESSNDNGDPEYSENGM 64


>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 375

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 552 FKISSDFNIFTATTALVNNVEAERSDDDIHYQPI 653
           F IS DFN   A +  + N E  R   D+ ++P+
Sbjct: 240 FIISQDFNGINAGSLFIRNSEVGRWIVDLWFEPL 273


>SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 220

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 549 LFKISSDFNIFTATTALVNNVEAERSDDDIHYQPIGSIET 668
           L K SSD +IFT      N+   E S +D+ +  +  IE+
Sbjct: 97  LMKKSSDNDIFTTFNDTTNDCMNEASCEDVRHSLLQIIES 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,943,634
Number of Sequences: 5004
Number of extensions: 56376
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)