Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_C18
         (794 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0198 + 15528576-15528645,15528746-15528893,15529182-155293...    32   0.46 
05_04_0190 - 18922555-18923349                                         29   4.3  
01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411           28   9.8  

>09_04_0198 +
           15528576-15528645,15528746-15528893,15529182-15529377,
           15529512-15529604,15530403-15530462,15530563-15530637,
           15531072-15531152,15531262-15531603,15531967-15531999
          Length = 365

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +3

Query: 681 KRGVPRQPSVMKNARGTVVIDTSVFNNPEHALSGLXEF 794
           + G PRQP V+  AR TV++D +    P  AL GL ++
Sbjct: 73  RNGTPRQPLVVPLARATVMLDPA--RVPAEALEGLADY 108


>05_04_0190 - 18922555-18923349
          Length = 264

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 359 AALNSLRCSDCAEAGNNVSALKKQLSTLRL*ESRVGYPLFIYN 487
           A L   RC      GN+VSAL+K    L L  S    P F+++
Sbjct: 44  AVLACPRCRHPTAVGNSVSALRKNFPILSLLSSSPSSPSFLHS 86


>01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411
          Length = 885

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 24/83 (28%), Positives = 29/83 (34%), Gaps = 5/83 (6%)
 Frame = +3

Query: 561 SSDFNIFTATTALVNNVEAERSDDDIH-----YQPIGSIETSFQNKRGVPRQPSVMKNAR 725
           S   N   A   L NN+ A  S+D  H     YQ    +E+S       P QPS      
Sbjct: 581 SQHSNYSDAVDCLNNNMSACNSNDQSHDFQNCYQRDREVESSATCMNNEPNQPSPTSVLE 640

Query: 726 GTVVIDTSVFNNPEHALSGLXEF 794
                DTS   +P     G   F
Sbjct: 641 ACFSNDTSSLGSPTEKNEGKEYF 663


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,742,580
Number of Sequences: 37544
Number of extensions: 285411
Number of successful extensions: 517
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)