Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_C18
         (794 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80023-15|AAG24046.1|  343|Caenorhabditis elegans Serpentine rec...    31   1.3  
U61953-6|AAO91706.1|  341|Caenorhabditis elegans Hypothetical pr...    31   1.3  
AL023847-6|CAA19552.1|  297|Caenorhabditis elegans Hypothetical ...    30   2.2  
Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z66563-1|CAA91468.1|  306|Caenorhabditis elegans Hypothetical pr...    28   6.7  
X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomera...    28   6.7  

>U80023-15|AAG24046.1|  343|Caenorhabditis elegans Serpentine
           receptor, class h protein200 protein.
          Length = 343

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 232 KFY*KLLLSLISPEIFYFCTS*SYLILIIFRMIGHFVFNLSF 107
           KF+  LL+ LI P +F+F  S   L+ +I +     + N+ F
Sbjct: 242 KFFITLLIQLIVPLVFFFFPSFYVLVSVIIKYYNQAILNILF 283


>U61953-6|AAO91706.1|  341|Caenorhabditis elegans Hypothetical
           protein R08C7.9 protein.
          Length = 341

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = -3

Query: 492 LILYINNGYPTLDSYNLNVESCFFKAETLLPASAQSEQRRLLRAALIS-FISFW---CSC 325
           ++ ++ N +P  DS+ + +  C F     LPA   S  R LL   LI+  +  W     C
Sbjct: 202 MVSWMGNPFPHDDSHRIQIILCQFIHSVHLPAKLFSNVRVLLDGLLIADAVLLWNMDKMC 261

Query: 324 FRDVN 310
            +DVN
Sbjct: 262 LKDVN 266


>AL023847-6|CAA19552.1|  297|Caenorhabditis elegans Hypothetical
           protein Y57A10C.10 protein.
          Length = 297

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +3

Query: 468 THCLYIISKYYVKSIPFLMLGFVQNFTLFKISSDFNIFTATTALVNNVEAE 620
           T C  ++S  +  +IP L++  V+ F  F I   F    A + L N    E
Sbjct: 189 TTCGILLSSLFCLTIPSLLISLVETFVGFSIFDQFGPIYAASLLTNEGRRE 239


>Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical
           protein M01E5.5b protein.
          Length = 734

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +2

Query: 329 EHQKEIKLIKAALNSLRCSDCAEAGNNVSALKKQLSTLRL 448
           + +KE+K  +AAL S R ++  +A      LK+QL  L++
Sbjct: 630 DKKKEVKEAEAALKSARGAEKEKAQKKYDRLKEQLKKLKI 669


>Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical
           protein M01E5.5a protein.
          Length = 806

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +2

Query: 329 EHQKEIKLIKAALNSLRCSDCAEAGNNVSALKKQLSTLRL 448
           + +KE+K  +AAL S R ++  +A      LK+QL  L++
Sbjct: 702 DKKKEVKEAEAALKSARGAEKEKAQKKYDRLKEQLKKLKI 741


>Z66563-1|CAA91468.1|  306|Caenorhabditis elegans Hypothetical
           protein F46C3.2 protein.
          Length = 306

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +3

Query: 495 YYVKSIPFLMLGFVQNFTLFKISSDFNIFTATTALVNN 608
           Y+VK + F++L +     ++    D NI+ A   ++ N
Sbjct: 240 YFVKGLQFILLWYTMLLAVYAHEHDLNIYPALVCVLTN 277


>X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomerase
           protein.
          Length = 806

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +2

Query: 329 EHQKEIKLIKAALNSLRCSDCAEAGNNVSALKKQLSTLRL 448
           + +KE+K  +AAL S R ++  +A      LK+QL  L++
Sbjct: 702 DKKKEVKEAEAALKSARGAEKEKAQKKYDRLKEQLKKLKI 741


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,883,145
Number of Sequences: 27780
Number of extensions: 302656
Number of successful extensions: 751
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)