Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_C18
         (794 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    28   0.11 
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        28   0.11 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    26   0.46 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    26   0.46 
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    23   3.3  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   7.5  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   7.5  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   7.5  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   7.5  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   7.5  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 477 LYIISKYYVKSIPFLMLGFVQNFTLFKISSDFNIFTATTALVNNV 611
           L  IS +++   P+L++ F   F L KIS  F I+ +  A  N V
Sbjct: 281 LMTISLWFMAWTPYLVINFSGIFNLVKISPLFTIWGSLFAKANAV 325


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 477 LYIISKYYVKSIPFLMLGFVQNFTLFKISSDFNIFTATTALVNNV 611
           L  IS +++   P+L++ F   F L KIS  F I+ +  A  N V
Sbjct: 31  LMTISLWFMAWTPYLVINFSGIFNLVKISPLFTIWGSLFAKANAV 75


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.8 bits (54), Expect = 0.46
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 659 NRNIISKQTRCSSATFCYEECKGNC 733
           NR++I  QT C+      + C GNC
Sbjct: 222 NRDLIIVQTGCTITRVIPQVCSGNC 246


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.8 bits (54), Expect = 0.46
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 659 NRNIISKQTRCSSATFCYEECKGNC 733
           NR++I  QT C+      + C GNC
Sbjct: 222 NRDLIIVQTGCTITRVIPQVCSGNC 246


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = +2

Query: 473 LFIYNIKI---LCEKYTFSYAWLCSKLHT 550
           LFI ++ I   +C+ +T+S+ W   K  T
Sbjct: 9   LFILSLTITIVMCQTFTYSHGWTNGKRST 37


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 483 YINNGYPTLDSYNLN 439
           Y NN Y  L  YN+N
Sbjct: 102 YNNNNYKKLQYYNIN 116


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 483 YINNGYPTLDSYNLN 439
           Y NN Y  L  YN+N
Sbjct: 102 YNNNNYKKLQYYNIN 116


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 483 YINNGYPTLDSYNLN 439
           Y NN Y  L  YN+N
Sbjct: 102 YNNNNYKKLQYYNIN 116


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 483 YINNGYPTLDSYNLN 439
           Y NN Y  L  YN+N
Sbjct: 102 YNNNNYKKLQYYNIN 116


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 495 YYVKSIPFLMLGFVQNFTLFKISSD 569
           YYV + PF+   F +N   ++ S D
Sbjct: 274 YYVNTAPFMKSQFGENNVQYQGSED 298


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,874
Number of Sequences: 438
Number of extensions: 3777
Number of successful extensions: 21
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)