Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_C17
(789 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0389 - 13409848-13409964,13410049-13410114,13410209-134103... 216 2e-56
01_07_0097 + 41070877-41070942,41071039-41071104,41071189-41071305 40 0.002
10_08_0870 - 21178136-21178534 30 1.8
09_02_0327 - 7284829-7284889,7284946-7286126 30 1.8
09_02_0121 + 4502628-4502696,4503727-4503829,4504205-4504328,450... 30 1.8
06_01_0275 + 2029542-2029689,2029777-2030295,2030657-2030754,203... 29 4.2
04_03_0129 - 11554917-11555033,11555470-11555613,11555807-115559... 28 7.4
05_05_0070 + 22148595-22148907,22148988-22149104,22149196-221493... 28 9.7
04_04_0716 + 27513201-27513854 28 9.7
02_02_0258 - 8374442-8375083 28 9.7
>05_03_0389 - 13409848-13409964,13410049-13410114,13410209-13410325,
13410822-13410893,13410979-13411258,13411528-13411730,
13412230-13412316,13412705-13412758,13413042-13413221,
13414402-13414576,13414628-13414918,13414923-13415344
Length = 687
Score = 216 bits (527), Expect = 2e-56
Identities = 96/184 (52%), Positives = 124/184 (67%)
Frame = +1
Query: 238 PWNHSGWFSSLDHASVRRGYEVYKQVCKACHSLQYIAFRNLVNVTHTEDEAKAEAAEVMI 417
PW H+G SS DHAS+RRG++VY QVC +CHS+ I++R+LV V +TE+E KA AAE+ +
Sbjct: 457 PWPHAGILSSYDHASIRRGHQVYTQVCASCHSMSLISYRDLVGVAYTEEETKAMAAEIEV 516
Query: 418 KDGPDEEGNYFERPGKLSDYLPSXXXXXXXXXXXXXXXXXXDLSLICSGRKGGEDYIFAL 597
DGP++EG F RPGKLSD P DLSLI R G++Y+FAL
Sbjct: 517 VDGPNDEGEMFTRPGKLSDRFPQPYPNEQAARFANGGAYPPDLSLITKARHNGQNYVFAL 576
Query: 598 LTGYMEPPAGVXLREGQNYNPYFPXGAISMAQVLFDEXXXYSDGTPATASXLAKDVATFL 777
LTGY +PPAGV +REG +YNPYFP GAI+M ++L D Y DGTPAT + + KDV +FL
Sbjct: 577 LTGYRDPPAGVQIREGLHYNPYFPGGAIAMPKMLIDGAVEYEDGTPATEAQMGKDVVSFL 636
Query: 778 KWCS 789
W +
Sbjct: 637 SWAA 640
>01_07_0097 + 41070877-41070942,41071039-41071104,41071189-41071305
Length = 82
Score = 40.3 bits (90), Expect = 0.002
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +1
Query: 685 MAQVLFDEXXXYSDGTPATASXLAKDVATFLKWCS 789
M ++L D Y DGTPAT + + KDV +FL W +
Sbjct: 1 MPKMLIDGAVEYEDGTPATEAQMGKDVVSFLSWAA 35
>10_08_0870 - 21178136-21178534
Length = 132
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -2
Query: 206 ACTDCSSAKSRAPTPPPTTP 147
AC DC S K AP P P TP
Sbjct: 21 ACPDCPSPKPPAPRPKPPTP 40
>09_02_0327 - 7284829-7284889,7284946-7286126
Length = 413
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 191 SSAKSRAPTPPPTTPKVDSHTFLFFV 114
+S SR P PPP P + H FLF +
Sbjct: 138 ASGDSRNPPPPPRRPAIVLHAFLFLL 163
>09_02_0121 +
4502628-4502696,4503727-4503829,4504205-4504328,
4505963-4506306,4506383-4506487,4507907-4508288,
4509173-4509437,4509936-4510094,4511150-4511201,
4511266-4511462,4512865-4513350,4513797-4514093
Length = 860
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 214 SLMPAQTAQVQKVELQHLHLPLPKWTATLFCFLSILECWWT 92
S+MP QT Q+ LQ L+LP FLS+ W+
Sbjct: 506 SVMPTQTGHAQEARLQQLNLPHAMEILIAVSFLSLFLVIWS 546
>06_01_0275 +
2029542-2029689,2029777-2030295,2030657-2030754,
2031718-2032028,2032560-2032631,2032729-2033398
Length = 605
Score = 29.1 bits (62), Expect = 4.2
Identities = 24/87 (27%), Positives = 38/87 (43%)
Frame = +1
Query: 202 QASGSEAHPPHNPWNHSGWFSSLDHASVRRGYEVYKQVCKACHSLQYIAFRNLVNVTHTE 381
++ + AHP H P+ SGW S D + E KQ + + ++ ++
Sbjct: 70 ESDPATAHPQHLPFEPSGWDS--DPPQLPPEQEQQKQKPQPAEKPRK-SWADMAQEDELA 126
Query: 382 DEAKAEAAEVMIKDGPDEEGNYFERPG 462
A+ +AA DG EEG+ RPG
Sbjct: 127 AAAEEDAAAAAADDG--EEGSEAGRPG 151
>04_03_0129 -
11554917-11555033,11555470-11555613,11555807-11555999,
11556083-11556139,11556300-11556403,11556882-11556953,
11557069-11557187,11557639-11557783,11558527-11558672,
11558758-11558827,11559000-11559056,11559081-11559228,
11559311-11559432,11559649-11559845,11560296-11560350,
11560468-11560680,11561239-11561386,11561515-11561585,
11563286-11563316,11563532-11563623,11565621-11565688,
11567895-11568069
Length = 847
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 221 LTHLTTLGITVAGSAPWTTLVSVGVMKFTNKSAR 322
L +L++ I VAG++ WT L V K TN+++R
Sbjct: 382 LQNLSSATIQVAGTSNWTKLEQKLVAKGTNRTSR 415
>05_05_0070 +
22148595-22148907,22148988-22149104,22149196-22149350,
22149987-22150061,22150179-22150469,22150942-22151292,
22151390-22151794
Length = 568
Score = 27.9 bits (59), Expect = 9.7
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -2
Query: 185 AKSRAPTPPPTTPKVDS 135
AK + P PPP++P+VD+
Sbjct: 78 AKEKKPPPPPSSPRVDA 94
>04_04_0716 + 27513201-27513854
Length = 217
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -2
Query: 221 ASEPDACTDCSSAKSRAPTPPPTTPKVDSHTFLFFVHP*VLVD 93
A PD C+ S+A +P PPP + D + LF + P +L+D
Sbjct: 142 AKSPDTCSVASAA---SPQPPPPDAEADPDSTLFDL-PDLLLD 180
>02_02_0258 - 8374442-8375083
Length = 213
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -3
Query: 616 VPCNQSVARRCNLRRPYVPSRSETSPVGKH-HCLQHEPHFHWGMETAGSQKV 464
+PC + RR RRP + S S + H + L+ EP WG A + +
Sbjct: 89 LPCRCARRRR---RRPATSTSSSASALPPHMYVLEREPPVRWGARVATADDI 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.133 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,335,314
Number of Sequences: 37544
Number of extensions: 498574
Number of successful extensions: 1834
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1825
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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