Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_C17
(789 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23565| Best HMM Match : Cytochrom_C1 (HMM E-Value=3.8e-15) 132 4e-31
SB_8522| Best HMM Match : Cytochrom_C1 (HMM E-Value=1.2e-06) 97 1e-20
SB_58357| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.086
SB_48339| Best HMM Match : BAG (HMM E-Value=5.9) 34 0.15
SB_39330| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.15
SB_5356| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.15
SB_4819| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.15
SB_40347| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_59443| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07) 30 1.9
SB_50798| Best HMM Match : CBS (HMM E-Value=2.8) 30 1.9
SB_49990| Best HMM Match : PAN (HMM E-Value=0.12) 30 1.9
SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07) 30 1.9
SB_46740| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_39727| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15) 30 1.9
SB_20587| Best HMM Match : rve (HMM E-Value=7.2e-15) 30 1.9
SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11) 30 1.9
SB_59576| Best HMM Match : rve (HMM E-Value=3.7e-14) 30 1.9
SB_55917| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_24375| Best HMM Match : rve (HMM E-Value=7.2e-15) 30 1.9
SB_213| Best HMM Match : rve (HMM E-Value=2.2e-08) 30 1.9
SB_16433| Best HMM Match : DUF1332 (HMM E-Value=5.4) 29 3.2
SB_50560| Best HMM Match : rve (HMM E-Value=7.2e-15) 29 4.3
SB_28941| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.8026e-45) 29 5.7
SB_57858| Best HMM Match : RNA_pol_A_CTD (HMM E-Value=5.7) 28 9.9
SB_37212| Best HMM Match : zf-C2H2 (HMM E-Value=2e-23) 28 9.9
>SB_23565| Best HMM Match : Cytochrom_C1 (HMM E-Value=3.8e-15)
Length = 134
Score = 132 bits (318), Expect = 4e-31
Identities = 57/101 (56%), Positives = 75/101 (74%)
Frame = +1
Query: 181 FALEQSVQASGSEAHPPHNPWNHSGWFSSLDHASVRRGYEVYKQVCKACHSLQYIAFRNL 360
+ L+ V A E HPP PW+H+G F+S+DH S+RRG++VY+QVC ACHS+ +AFR+L
Sbjct: 19 YLLQPDVHAEELELHPPKLPWSHNGVFNSIDHDSIRRGFQVYRQVCAACHSMNRLAFRHL 78
Query: 361 VNVTHTEDEAKAEAAEVMIKDGPDEEGNYFERPGKLSDYLP 483
V V +TEDE KA AAE + DGP+++G F RPGKLSD LP
Sbjct: 79 VGVCYTEDEMKAIAAEYDVVDGPNDQGEMFTRPGKLSDPLP 119
>SB_8522| Best HMM Match : Cytochrom_C1 (HMM E-Value=1.2e-06)
Length = 127
Score = 97.5 bits (232), Expect = 1e-20
Identities = 43/68 (63%), Positives = 50/68 (73%)
Frame = +1
Query: 580 DYIFALLTGYMEPPAGVXLREGQNYNPYFPXGAISMAQVLFDEXXXYSDGTPATASXLAK 759
DY+F LLTGY +PPAGV +R+ +N YFP AI MAQ L++E Y DGTPAT S LAK
Sbjct: 1 DYVFHLLTGYADPPAGVEIRDDLYFNAYFPGQAIGMAQALYNEIIEYEDGTPATTSQLAK 60
Query: 760 DVATFLKW 783
DV TFLKW
Sbjct: 61 DVCTFLKW 68
>SB_58357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 114
Score = 34.7 bits (76), Expect = 0.086
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = -3
Query: 604 QSVARRCNLRRPYVPSRSETSPVGKHHCLQHEPHFHWGME 485
QSVARR N+ R +RS +SP G+ L H P G E
Sbjct: 9 QSVARRWNIHRIRPSTRSNSSPPGRRCFLYHYPEMTGGQE 48
>SB_48339| Best HMM Match : BAG (HMM E-Value=5.9)
Length = 404
Score = 33.9 bits (74), Expect = 0.15
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = -3
Query: 661 MDCSSVPHVAXHQQEVPCNQSVARRCNLRRPYVPSRSETSPVGKHHCLQHEPHFHWGME 485
++C ++ Q+E+ QSVARR N+ R +RS SP G+ L H P G E
Sbjct: 340 VECLKFCYMGVLQREL---QSVARRWNIHRIRPSTRSNISPPGRPCFLYHYPEMTGGQE 395
>SB_39330| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 33.9 bits (74), Expect = 0.15
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = -3
Query: 661 MDCSSVPHVAXHQQEVPCNQSVARRCNLRRPYVPSRSETSPVGKHHCLQHEPHFHWGME 485
++C ++ Q+E+ QSVARR N+ R +RS SP G+ L H P G E
Sbjct: 16 VECLKFCYMGVLQREL---QSVARRWNIHRIRPSTRSNISPPGRPCFLYHYPEMTGGQE 71
>SB_5356| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 33.9 bits (74), Expect = 0.15
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = -3
Query: 661 MDCSSVPHVAXHQQEVPCNQSVARRCNLRRPYVPSRSETSPVGKHHCLQHEPHFHWGME 485
++C ++ Q+E+ QSVARR N+ R +RS SP G+ L H P G E
Sbjct: 112 VECLKFCYMGVLQREL---QSVARRWNIHRIRPSTRSNISPPGRPCFLYHYPEMTGGQE 167
>SB_4819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 33.9 bits (74), Expect = 0.15
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = -3
Query: 661 MDCSSVPHVAXHQQEVPCNQSVARRCNLRRPYVPSRSETSPVGKHHCLQHEPHFHWGME 485
++C ++ Q+E+ QSVARR N+ R +RS SP G+ L H P G E
Sbjct: 112 VECLKFCYMGVLQREL---QSVARRWNIHRIRPSTRSNISPPGRPCFLYHYPEMTGGQE 167
>SB_40347| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 398
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -3
Query: 613 PCNQSVARRCNLRRPYVPSRSETSPVGKHHCLQHEPHFHWGMETAGSQKVY 461
PC Q + R C + +PS S+ + +G H C + + W T+ V+
Sbjct: 6 PCLQQL-RMCLQKPDVIPSVSQGANIGIHECKKQFKYERWNCSTSNDPTVF 55
>SB_59443| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07)
Length = 942
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -2
Query: 209 DACTDCS-SAKSRAPTPP-PTTP 147
D CTDC+ +A S+A TPP PT+P
Sbjct: 616 DGCTDCNRNAPSQAATPPLPTSP 638
>SB_50798| Best HMM Match : CBS (HMM E-Value=2.8)
Length = 234
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -2
Query: 209 DACTDCS-SAKSRAPTPP-PTTP 147
D CTDC+ +A S+A TPP PT+P
Sbjct: 173 DGCTDCNRNAPSQAATPPLPTSP 195
>SB_49990| Best HMM Match : PAN (HMM E-Value=0.12)
Length = 310
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Frame = +1
Query: 352 RNLVNVTHTEDEAKAEAA----EVMIKDGPDEEGNYFERPGKLSD 474
+N++N ++ EA A+ + E++ K+GP +G Y+ PG S+
Sbjct: 39 KNMMNANESDIEADADFSLFNREILDKEGPGPDGEYYIDPGSGSN 83
>SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07)
Length = 1286
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -2
Query: 209 DACTDCS-SAKSRAPTPP-PTTP 147
D CTDC+ +A S+A TPP PT+P
Sbjct: 1157 DGCTDCNRNAPSQAATPPLPTSP 1179
>SB_46740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -2
Query: 209 DACTDCS-SAKSRAPTPP-PTTP 147
D CTDC+ +A S+A TPP PT+P
Sbjct: 73 DGCTDCNRNAPSQAATPPLPTSP 95
>SB_39727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -2
Query: 209 DACTDCS-SAKSRAPTPP-PTTP 147
D CTDC+ +A S+A TPP PT+P
Sbjct: 124 DGCTDCNRNAPSQAATPPLPTSP 146
>SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)
Length = 1600
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -2
Query: 209 DACTDCS-SAKSRAPTPP-PTTP 147
D CTDC+ +A S+A TPP PT+P
Sbjct: 635 DGCTDCNRNAPSQAATPPLPTSP 657
>SB_20587| Best HMM Match : rve (HMM E-Value=7.2e-15)
Length = 1485
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -2
Query: 209 DACTDCS-SAKSRAPTPP-PTTP 147
D CTDC+ +A S+A TPP PT+P
Sbjct: 1249 DGCTDCNRNAPSQAATPPLPTSP 1271
>SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11)
Length = 1213
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -2
Query: 209 DACTDCS-SAKSRAPTPP-PTTP 147
D CTDC+ +A S+A TPP PT+P
Sbjct: 790 DGCTDCNRNAPSQAATPPLPTSP 812
>SB_59576| Best HMM Match : rve (HMM E-Value=3.7e-14)
Length = 707
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -2
Query: 209 DACTDCS-SAKSRAPTPP-PTTP 147
D CTDC+ +A S+A TPP PT+P
Sbjct: 450 DGCTDCNRNAPSQAATPPLPTSP 472
>SB_55917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1412
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -2
Query: 209 DACTDCS-SAKSRAPTPP-PTTP 147
D CTDC+ +A S+A TPP PT+P
Sbjct: 846 DGCTDCNRNAPSQAATPPLPTSP 868
>SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -2
Query: 209 DACTDCS-SAKSRAPTPP-PTTP 147
D CTDC+ +A S+A TPP PT+P
Sbjct: 275 DGCTDCNRNAPSQAATPPLPTSP 297
>SB_24375| Best HMM Match : rve (HMM E-Value=7.2e-15)
Length = 638
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -2
Query: 209 DACTDCS-SAKSRAPTPP-PTTP 147
D CTDC+ +A S+A TPP PT+P
Sbjct: 453 DGCTDCNRNAPSQAATPPLPTSP 475
>SB_213| Best HMM Match : rve (HMM E-Value=2.2e-08)
Length = 745
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -2
Query: 209 DACTDCS-SAKSRAPTPP-PTTP 147
D CTDC+ +A S+A TPP PT+P
Sbjct: 232 DGCTDCNRNAPSQAATPPLPTSP 254
>SB_16433| Best HMM Match : DUF1332 (HMM E-Value=5.4)
Length = 343
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -3
Query: 598 VARRCNLRRPYVPSRSETSPVGKHHCLQHEPHFHWGME 485
VARR N+ R +RS SP G+ L H P G E
Sbjct: 240 VARRWNIHRIRPSTRSNISPPGRPCFLYHYPEMTGGQE 277
>SB_50560| Best HMM Match : rve (HMM E-Value=7.2e-15)
Length = 364
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = -2
Query: 209 DACTDCS-SAKSRAPTPP-PTTP 147
D CTDC+ +A S+A TPP PT P
Sbjct: 173 DGCTDCNRNAPSQAATPPLPTYP 195
>SB_28941| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.8026e-45)
Length = 2022
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 175 LLFALEQSVQASGSEAHPPHNPWNHSGWFSSLDHA 279
++FALEQ + + +A PH W H + + ++ A
Sbjct: 1138 IVFALEQLQKITNQQACTPHEQWFHRAYSALIEKA 1172
>SB_57858| Best HMM Match : RNA_pol_A_CTD (HMM E-Value=5.7)
Length = 280
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +1
Query: 286 RRGYEVYKQVCKACHSLQYIAFRNL--VNVTHTEDEAKAEAAEVMIKDGPDEEGNYFE 453
+R Y YK+ KAC +Y F+ L + + +DE A+ +K+ P + +Y +
Sbjct: 13 KRLYNNYKKSGKACDKEKYRKFQKLFKIKMKKAQDEYIADTLNSDLKEKPKKFWSYIK 70
>SB_37212| Best HMM Match : zf-C2H2 (HMM E-Value=2e-23)
Length = 827
Score = 27.9 bits (59), Expect = 9.9
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Frame = -1
Query: 339 LQRVACLADLFVNFITPTDTSVVQGAEPATVIPRVVRWVSFRAXXXXXXXXXXX*SSNTS 160
L + +DL +N +DT G +P + +S + S S
Sbjct: 666 LSSLKASSDLHLNL---SDTDYTDGEDPLSARSAFSESISMSSDISSLLANSTCASH--S 720
Query: 159 TYHSQSGQPHFSVFCPSLSVG--GQLTSLRP 73
TY S S QP S C S+S G G++ S P
Sbjct: 721 TYSSYSSQPSGSRDCESVSSGEEGRVNSTPP 751
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.133 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,833,641
Number of Sequences: 59808
Number of extensions: 530955
Number of successful extensions: 1731
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1728
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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