Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_C12
         (747 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26234| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_45024| Best HMM Match : C1_4 (HMM E-Value=1.8)                      29   5.3  
SB_37669| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_37196| Best HMM Match : C1_4 (HMM E-Value=1.1)                      28   7.0  
SB_435| Best HMM Match : zf-CCHC (HMM E-Value=2)                       28   7.0  
SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095)                    28   7.0  
SB_24702| Best HMM Match : C1_4 (HMM E-Value=0.98)                     28   7.0  
SB_5758| Best HMM Match : fn3 (HMM E-Value=6.6e-18)                    28   9.2  

>SB_26234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 368

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 567 HRELNVMSSRRKKKHWKFLHFF 502
           HR  + +SSRR  K WK+L +F
Sbjct: 254 HRSYHTVSSRRHVKWWKYLFYF 275


>SB_45024| Best HMM Match : C1_4 (HMM E-Value=1.8)
          Length = 212

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 567 HRELNVMSSRRKKKHWKFLHFF 502
           HR    +SSRR  K WK+L +F
Sbjct: 69  HRSYYTVSSRRHMKWWKYLFYF 90


>SB_37669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 567 HRELNVMSSRRKKKHWKFLHFF 502
           HR    +SSRR  K WK+L +F
Sbjct: 136 HRSYYTVSSRRHMKWWKYLFYF 157


>SB_37196| Best HMM Match : C1_4 (HMM E-Value=1.1)
          Length = 218

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 567 HRELNVMSSRRKKKHWKFLHFF 502
           HR    +SSRR  K WK+L +F
Sbjct: 68  HRSYYTVSSRRHVKWWKYLFYF 89


>SB_435| Best HMM Match : zf-CCHC (HMM E-Value=2)
          Length = 913

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 567 HRELNVMSSRRKKKHWKFLHFF 502
           HR    +SSRR  K WK+L +F
Sbjct: 853 HRSYYTVSSRRHVKWWKYLFYF 874


>SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095)
          Length = 201

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 567 HRELNVMSSRRKKKHWKFLHFF 502
           HR    +SSRR  K WK+L +F
Sbjct: 58  HRSYYTVSSRRHVKWWKYLFYF 79


>SB_24702| Best HMM Match : C1_4 (HMM E-Value=0.98)
          Length = 221

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 567 HRELNVMSSRRKKKHWKFLHFF 502
           HR    +SSRR  K WK+L +F
Sbjct: 68  HRSYYTVSSRRHVKWWKYLFYF 89


>SB_5758| Best HMM Match : fn3 (HMM E-Value=6.6e-18)
          Length = 1191

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -1

Query: 603 DYKKKTP*TPK-CHRELNVMSSRRKKKHWKFLHFF 502
           +Y   TP +    H  +NV SS     HWKF+ +F
Sbjct: 694 NYSTPTPSSESPLHVMVNVKSSTEMMVHWKFIEYF 728


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,752,688
Number of Sequences: 59808
Number of extensions: 339541
Number of successful extensions: 704
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)