Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_C06
(743 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|... 49 8e-07
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 30 0.30
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote... 27 3.7
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 26 4.9
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 4.9
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo... 26 4.9
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 26 6.5
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces... 25 8.6
SPAC1071.09c |||DNAJ domain protein, DNAJC9 family|Schizosacchar... 25 8.6
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c... 25 8.6
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 25 8.6
>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 48.8 bits (111), Expect = 8e-07
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Frame = +1
Query: 430 KVLLRIYGQVHGERAMDAIVTESVIFTLLSERRLGPKLHGVFSGGRIEEYIPARPLLTRE 609
K+LLRIYG H E ++ V E L+ +GP L G FS GR E+Y+ + L +
Sbjct: 89 KLLLRIYGP-HVELFINRQV-ELENLKRLARHNIGPYLIGEFSNGRFEQYMESTTLTCKT 146
Query: 610 LAEPALSMKIAEKMAAIHSMDIPLSKEPNWL---WKTMWKWLXICK 738
+ +P LS+ + ++ +H+ + E + WK WL K
Sbjct: 147 IRDPKLSIYVGRRLCELHNFILLHPHEVLEMPAAWKNCLVWLPKAK 192
Score = 31.1 bits (67), Expect = 0.17
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +1
Query: 235 ELEFRRISGGLSNFLYYVALPE 300
+L +RISG L+N +YYVA PE
Sbjct: 62 KLHIKRISGALTNAVYYVAPPE 83
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 30.3 bits (65), Expect = 0.30
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 328 KRESSPETELETVASKLVKKSMARSNSFSIEEPKK 432
K + SP+ ++ + K +KKS R+NS S EP+K
Sbjct: 5 KNQKSPKPKVASSKLKNIKKSSKRNNSQSSTEPRK 39
>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 26.6 bits (56), Expect = 3.7
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 416 SRNQRRYCSGYTARSTARGPWTRS*RNLSYSLCSPRGGWARSSTESSLAGGSKSTYR 586
SR Q +C T + TA G W S + S +L G W + ++ A ++ST R
Sbjct: 35 SRYQCPFCGRLTVKRTAAGIWKCSGKGCSKTLAG--GAW---TVTTAAATSARSTIR 86
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 26.2 bits (55), Expect = 4.9
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Frame = +1
Query: 91 LFTESKXSXYVKMAKXLQMCGTEAE-----MREVAARICRNYLHGAWKSVDPTELEFRRI 255
LF+ SK S YV L +CG + R + R+ + Y H A+ +DP + E
Sbjct: 321 LFSTSK-SDYV--VPRLMVCGPKGSGKSSFSRYITNRLLQQYRHIAYLDLDPGQPEVVP- 376
Query: 256 SGGLSNFLYYVALP 297
SG +S LYY+ P
Sbjct: 377 SGHIS--LYYINSP 388
>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 481
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/45 (24%), Positives = 25/45 (55%)
Frame = +1
Query: 412 SIEEPKKVLLRIYGQVHGERAMDAIVTESVIFTLLSERRLGPKLH 546
S E+ K+ I+ Q+ G+ ++ +V +I+T+ ++ + K H
Sbjct: 195 SFEQCGKIGSAIHEQLEGKEVVNELVAVYLIYTVFKDQGISSKAH 239
>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 26.2 bits (55), Expect = 4.9
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -1
Query: 590 LAGMYSSILPPEKTPWSFGPSLLSESKVNMTD 495
+A S I PP KTP S PS L S N+ D
Sbjct: 87 VAAAISGIQPPPKTPSSDSPS-LENSLSNLND 117
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 25.8 bits (54), Expect = 6.5
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +1
Query: 331 RESSPETELETVASKLVKKSMARSNSFSIEEPKKVLLRIYGQVHGERAMDAIVTESVIFT 510
RES +T + + ++ + KS + S + PKK +I + G +D V E+ + +
Sbjct: 833 RESLEKTRVSSNDNRTLAKSFETTESNKMSTPKKSFEQIKSKSLGVTNVDGTVNEARLRS 892
Query: 511 L 513
L
Sbjct: 893 L 893
>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 8.6
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = +1
Query: 193 RNYLHGAWKSVDPTELEFRRISGGLSN 273
++Y H AW + T+ + +SGG+ +
Sbjct: 122 KSYYHNAWMQSENTKSKGNNVSGGIES 148
>SPAC1071.09c |||DNAJ domain protein, DNAJC9
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +1
Query: 418 EEPKKVLLRIYGQVHGERAMDAIVTESVIFTLLSERRLGPKLHGVFSGGRIEEY 579
EE K +L+ Y + G+ +MD I+ E + + E R ++ G+I +Y
Sbjct: 140 EEEKCDVLKAYEK--GKGSMDVILEEVMCCEISDEDRFRQVINNAIKDGKISKY 191
>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 433
Score = 25.4 bits (53), Expect = 8.6
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Frame = +1
Query: 280 YYVALPEDPSKLCTFTKRESSPETELETVA----SKLVKKSMARSNSFSIEEPKKVLLRI 447
YY A+ D C ++ETVA S ++K+S+ S + ++++ ++
Sbjct: 137 YYFAILMDRENQCPMIVASDQGGVDIETVAAENPSAIIKRSLPNSPNLDPHIAEELVDKL 196
Query: 448 -YGQVHGERAMDAIVTESVIF 507
+ +A+DAIV +F
Sbjct: 197 GFSSSSKPKAVDAIVKLYKVF 217
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -1
Query: 533 PSLLSESKVNMTDSVTIASMALSPWTWPYILSNTFFGSSM 414
P ++SES + S +A M LSP T + + +FG +M
Sbjct: 378 PKVISESSLETVQSFFLAGMYLSP-TLAHEVVYMYFGIAM 416
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,779,962
Number of Sequences: 5004
Number of extensions: 53181
Number of successful extensions: 189
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -