Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_C06
(743 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56439| Best HMM Match : No HMM Matches (HMM E-Value=.) 92 4e-19
SB_377| Best HMM Match : IQ (HMM E-Value=0.0002) 35 0.061
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 30 2.3
SB_36474| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_56909| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_41854| Best HMM Match : FA_hydroxylase (HMM E-Value=2.8) 29 3.0
SB_33851| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_30861| Best HMM Match : Peptidase_A17 (HMM E-Value=2.1e-40) 29 3.0
SB_1216| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_56538| Best HMM Match : rve (HMM E-Value=3.6e-09) 29 3.0
SB_38168| Best HMM Match : Lectin_C (HMM E-Value=7.9e-06) 29 3.0
SB_12094| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.00041) 29 4.0
SB_13659| Best HMM Match : Peptidase_C5 (HMM E-Value=0.00051) 28 9.2
SB_21828| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
>SB_56439| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 92.3 bits (219), Expect = 4e-19
Identities = 55/183 (30%), Positives = 91/183 (49%), Gaps = 1/183 (0%)
Frame = +1
Query: 163 EMREVAA-RICRNYLHGAWKSVDPTELEFRRISGGLSNFLYYVALPEDPSKLCTFTKRES 339
E R++ A ++C YL G+W V E F+ ++GGLSN ++ LPE F + +
Sbjct: 16 EERKIQAHKLCGEYLGGSWSEVSLNEFGFKVLTGGLSNEIFICNLPEH------FAENKQ 69
Query: 340 SPETELETVASKLVKKSMARSNSFSIEEPKKVLLRIYGQVHGERAMDAIVTESVIFTLLS 519
L + +LV K + +H ++V E+V+F LL+
Sbjct: 70 EVRQVLFRIYGRLVGK-------------------LISNIH------SLVAENVVFALLA 104
Query: 520 ERRLGPKLHGVFSGGRIEEYIPARPLLTRELAEPALSMKIAEKMAAIHSMDIPLSKEPNW 699
E+++ PKL+ +F GR+EE++ A+ L E+ S+KIA K+ H + +PL K P W
Sbjct: 105 EKKIAPKLYAIFPEGRLEEFLQAKSLTVAEIRSAENSVKIARKLREFHGLSLPLGKNPKW 164
Query: 700 LWK 708
W+
Sbjct: 165 FWE 167
>SB_377| Best HMM Match : IQ (HMM E-Value=0.0002)
Length = 1376
Score = 35.1 bits (77), Expect = 0.061
Identities = 28/85 (32%), Positives = 40/85 (47%)
Frame = +1
Query: 151 GTEAEMREVAARICRNYLHGAWKSVDPTELEFRRISGGLSNFLYYVALPEDPSKLCTFTK 330
GT E+R ++A I N G D E+E + G + + V++P+D SK C K
Sbjct: 575 GTIPEIRVISASIDNNS-EGVTDMDDTVEIE--PLDLGKYSEIPDVSVPDDESKECQPVK 631
Query: 331 RESSPETELETVASKLVKKSMARSN 405
RE S E T +S SM+ N
Sbjct: 632 REESGEKSTSTQSSSEFIGSMSEGN 656
>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 3804
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +1
Query: 190 CRNYLHGAWKSVDPTELEFRRISGGLSNF-LYYVALPEDPSKLCTFTKRESSPETELETV 366
CRNY G W S L+F R++ G+ + A +LC F +S+ + V
Sbjct: 2255 CRNYKGGHWASEYTGSLQFFRLNDGMPSLSASSAATATRVYELCLFFLEDSAAVMQFSGV 2314
Query: 367 ASK 375
+K
Sbjct: 2315 TTK 2317
>SB_36474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1608
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 399 IEFFQHRGTKEGIAQDIRPGPRREGHGRDRDGICHI-HFALREEAGPEAPRSLL 557
I F HR + QD + RR H R R GI + LRE+ + P + +
Sbjct: 1101 IRTFVHRNVDDAANQDYKDHHRRRSHNRPRPGIGWVRRKVLREDFTKDPPANAM 1154
>SB_56909| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1379
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 380 SRNRWPDRILSASRNQRRYCSGYTARSTARGPWTRS*RNL 499
SR RW L A+ RR+ Y R W R RNL
Sbjct: 1247 SRKRWRQAQLLANHYWRRWLKEYIPSLQVRSKWNRKQRNL 1286
>SB_41854| Best HMM Match : FA_hydroxylase (HMM E-Value=2.8)
Length = 476
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 380 SRNRWPDRILSASRNQRRYCSGYTARSTARGPWTRS*RNL 499
SR RW L A+ RR+ Y R W R RNL
Sbjct: 15 SRKRWRQAQLLANHYWRRWLKEYIPSLQVRSKWNRKQRNL 54
>SB_33851| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 380 SRNRWPDRILSASRNQRRYCSGYTARSTARGPWTRS*RNL 499
SR RW L A+ RR+ Y R W R RNL
Sbjct: 49 SRKRWRQAQLLANHYWRRWLKEYIPSLQVRSKWNRKQRNL 88
>SB_30861| Best HMM Match : Peptidase_A17 (HMM E-Value=2.1e-40)
Length = 1740
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 380 SRNRWPDRILSASRNQRRYCSGYTARSTARGPWTRS*RNL 499
SR RW L A+ RR+ Y R W R RNL
Sbjct: 1637 SRKRWRQAQLLANHYWRRWLKEYIPSLQVRSKWNRKQRNL 1676
>SB_1216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1834
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 380 SRNRWPDRILSASRNQRRYCSGYTARSTARGPWTRS*RNL 499
SR RW L A+ RR+ Y R W R RNL
Sbjct: 1732 SRKRWRQAQLLANHYWRRWLKEYIPSLQVRSKWNRKQRNL 1771
>SB_56538| Best HMM Match : rve (HMM E-Value=3.6e-09)
Length = 317
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 380 SRNRWPDRILSASRNQRRYCSGYTARSTARGPWTRS*RNL 499
SR RW L A+ RR+ Y R W R RNL
Sbjct: 215 SRKRWRQAQLLANHYWRRWLKEYIPSLQVRSKWNRKQRNL 254
>SB_38168| Best HMM Match : Lectin_C (HMM E-Value=7.9e-06)
Length = 583
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 606 PGQERSG-RYVLFDPPAREDSVELRAQPPLGEQSEYDRFRHDR 481
PG+ R+ + D P ED VELR + P G++ +Y ++++
Sbjct: 459 PGETRNTVQQCTPDEPGVEDGVELRLRLPSGQKPQYHGIKYEK 501
>SB_12094| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.00041)
Length = 754
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +1
Query: 184 RICRNYLHGAWKSVDPTELEFRRISGGLSNFLYYVALPEDPSK 312
R+ + LH ++DP E +S GL N YYV LPED K
Sbjct: 148 RVVTDGLHNL-TTIDPGGEEHTSLSTGLYN--YYVRLPEDAPK 187
>SB_13659| Best HMM Match : Peptidase_C5 (HMM E-Value=0.00051)
Length = 1024
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 478 DAIVTESVIFTLLSERRLGPKLHGVFSGGRIEEYIP 585
DA+ TE + + S+R + P GVF R+ +IP
Sbjct: 836 DAMRTEELEAMVRSDRYIEPVFEGVFHSDRLPTFIP 871
>SB_21828| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 720 LPHRLPQPVRFLRQRNIHRMYGGHLLGYL 634
L HRL QP+ +L R + R+Y LL ++
Sbjct: 255 LGHRLGQPIAYLPSRRLARIYRNVLLRHI 283
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,759,088
Number of Sequences: 59808
Number of extensions: 430588
Number of successful extensions: 1257
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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