Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_C05
(764 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 31 0.24
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 29 0.73
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 29 0.96
SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar... 28 1.7
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 28 1.7
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 27 2.9
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ... 27 3.9
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 26 5.1
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz... 26 5.1
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 26 6.8
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 6.8
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1... 26 6.8
SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|... 25 9.0
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 30.7 bits (66), Expect = 0.24
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 337 YEADKQSKYLENNGESSKGIDSHTETSLNGARNGSFRKLSNSFVPFGK 480
Y+A +QS L NG++ K ++ + + G+ F L PFGK
Sbjct: 657 YDASQQSTSLLMNGQTLKNLEIFSNSFDGGSEGTLFHLLCRCVTPFGK 704
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 29.1 bits (62), Expect = 0.73
Identities = 25/93 (26%), Positives = 40/93 (43%)
Frame = +1
Query: 184 KKMPKIPYKPEKSGGNDDDYEIVSFDDFSDKSPGSKTDLLTLNDNINYRLYYEADKQSKY 363
+K+ K PEK+ + + S D SD S ND+ + E++ S
Sbjct: 84 QKISKKGAPPEKAHSSSEASGSGSSSDESDSSSSESESSSEDNDSSSSSSDSESESSS-- 141
Query: 364 LENNGESSKGIDSHTETSLNGARNGSFRKLSNS 462
E++ SS DS +E+S G+ + S S S
Sbjct: 142 -EDSDSSSSSSDSESESSSEGSDSSSSSSSSES 173
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 28.7 bits (61), Expect = 0.96
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +1
Query: 256 FDDFSDKSPGSKTDLLTLNDNINYRLYYEADKQSKYLENNGESSKGIDSHT 408
+ +F D+SP S T N ++ ++ K S L+ +SS+ +DSHT
Sbjct: 94 YTNFDDESPSSPTHPSVSNITVDG----DSKKHSLQLQEEEKSSESLDSHT 140
>SPMIT.03 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial||Partial|Manual
Length = 323
Score = 27.9 bits (59), Expect = 1.7
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +1
Query: 265 FSDKSPGSKTDLLTLNDNINYRLYYEADKQSKYL----ENNGESSKGIDSHTETSLNGAR 432
FSD + +L + I RL Y+ D++ +YL ++N + G +T G+
Sbjct: 204 FSDADASFQIKILNRDKKIEVRLNYQIDQKKEYLLSLIKDNLGGNIGYRKSQDTYYYGST 263
Query: 433 N-GSFRKLSNSF 465
+ GS +K+ N F
Sbjct: 264 SFGSAKKVINYF 275
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 27.9 bits (59), Expect = 1.7
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Frame = +1
Query: 262 DFSDKSPGSKTDLLTLNDNINYRLYY----EADKQSKYLENNGESSKGIDSHTETSLNGA 429
DFS S SK + L IN+R + E+D Q++YL+ + ETSL+ +
Sbjct: 56 DFSTHSNPSKDNQLISPPKINHREFLNEEKESDTQTRYLKQLINICNSPSKNHETSLSPS 115
Query: 430 R---NGSFRKLSN 459
+ + + RKL N
Sbjct: 116 KSTIDNNERKLDN 128
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 27.1 bits (57), Expect = 2.9
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 265 FSDKSPGSKTDLLTLNDNINYRLYYEADKQSKYLENNGESSKGID 399
FSD + G K L ++++ N YY D K E E S G D
Sbjct: 545 FSDTASGEKNTKLNIDESTN---YYNTDSIDKVGEPFDEISSGYD 586
>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 26.6 bits (56), Expect = 3.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 394 YLWMILHCFLDILIVYLLRNR 332
YLWM+L+C + V +R R
Sbjct: 166 YLWMVLNCLTNAAFVLAMRKR 186
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.2 bits (55), Expect = 5.1
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = +1
Query: 208 KPEKSGGNDD----DYEIVSFDDFSDKSPGSKTDLLTLNDNINYRLYYEADKQSKYLENN 375
KPE +DD D+ DD D G + LL LN+ Y+L+Y K + E++
Sbjct: 153 KPETVPPDDDPEKPDWIHFEQDDHVDVICGKEAFLLPLNEYPEYKLFYPI-KSGVFNESD 211
Query: 376 GESSK 390
SS+
Sbjct: 212 YASSQ 216
>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -3
Query: 264 IIERNNFVVIVISTRLFWFIWYFRHFL*SKYTVSFIDRFSE 142
++E ++F+V+V +W +W F L +K + ++ F E
Sbjct: 232 VVENDSFIVVVP----YWALWPFETLLIAKEHLKSLEEFEE 268
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 367 ENNGESSKGIDSHTETSLNGARNGSFRKLSNSFVPFGKSGGKTH 498
++ GES+K D++T TS + R K + + KSG K H
Sbjct: 294 QDTGESNK--DNNTSTSKHKKRPKRLSKFKQAKLETKKSGNKDH 335
>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 471
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -1
Query: 128 VVCCIGFSIFFLLNNRRLFXKIYDTSSNYNW 36
VV GFS +FLLN + IY TS YN+
Sbjct: 285 VVAFSGFSAYFLLNAYQASVPIY-TSMLYNY 314
>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -3
Query: 213 WFIWYFRHFL*SKYTVSFIDRFSEMAVNGSLLYWFFYIF 97
WF ++F + +K V F+D + + NG + F IF
Sbjct: 499 WFTYFFEYSGPNKALVGFLDAITLVMENGFAIGAFISIF 537
>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
L23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 161
Score = 25.4 bits (53), Expect = 9.0
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +2
Query: 368 KTMENHPKVLTVIQKRR*MEQEMDHSENYQILLSHSENPAGRLTRR 505
KT+ +PKVL + +R + +E+ ++ QIL S+ RL ++
Sbjct: 117 KTLSRYPKVLEQVDMKR-VNEELSKLQDKQIL--ESQQKIARLLKK 159
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,269,547
Number of Sequences: 5004
Number of extensions: 71658
Number of successful extensions: 232
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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