Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_C05
(764 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0994 + 8382406-8382499,8382650-8383083 30 2.3
04_03_0308 + 14182034-14182522,14182632-14182751,14183694-141839... 30 2.3
02_01_0294 + 1968162-1968212,1969379-1969484,1969785-1969970,197... 29 3.1
12_02_1090 - 25994366-25995410,25995632-25995971,25997266-25997686 29 4.1
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917... 29 4.1
06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833... 29 5.4
03_02_0901 + 12267042-12267182,12267949-12268095,12268163-122682... 28 7.1
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 28 7.1
12_02_1268 + 27458823-27460046 28 9.4
09_03_0156 - 12844549-12845138,12845237-12845723 28 9.4
08_01_0382 - 3402015-3403604 28 9.4
01_01_0469 - 3456067-3456123,3456414-3456565,3456649-3456779,345... 28 9.4
01_01_0185 - 1570942-1571178,1571525-1571656,1571737-1571816,157... 28 9.4
>07_01_0994 + 8382406-8382499,8382650-8383083
Length = 175
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +1
Query: 619 GTGSSVLAIILLCGLSLASYWAVGGTIGGSWGEEHYXKLWERT 747
G+ VLAI+ CG S WA GG G+ G H W T
Sbjct: 112 GSMKEVLAIVRPCGRVEPSLWATGGLAAGAPG-AHGGGRWAST 153
>04_03_0308 +
14182034-14182522,14182632-14182751,14183694-14183937,
14184020-14184312
Length = 381
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 676 YWAVGGTIGGSWGEEHYXKLWERTHPEN 759
YW + + G +WGE+ Y K+ H +N
Sbjct: 333 YWIIKNSWGENWGEKGYYKICRGPHDKN 360
>02_01_0294 +
1968162-1968212,1969379-1969484,1969785-1969970,
1970562-1971011,1971121-1971204,1971378-1971445
Length = 314
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/72 (26%), Positives = 30/72 (41%)
Frame = -1
Query: 560 LCSLDEDSFSFLDLTPLNNGV*VFPPDFPNGTKEFDNFLNDPFLAPFSDVSV*LSIPLDD 381
+ +D SF FL P N DF + +N+ PF+ P + S P D
Sbjct: 233 IMDMDSSSFGFLSQIPRNFSFSDLTEDFSQSAEILENYGRSPFI-PSEPNNFSESTPGDH 291
Query: 380 SPLFSRYFDCLS 345
+ + +R D +S
Sbjct: 292 AEIGNRRLDTIS 303
>12_02_1090 - 25994366-25995410,25995632-25995971,25997266-25997686
Length = 601
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 637 LAIILLCGLSLASYWAVGGTIGGSW 711
LA+I+ ++ A+YW +GG GG W
Sbjct: 467 LAVIVASSVATAAYWGLGGD-GGGW 490
>03_05_0697 +
26888791-26888861,26890468-26890579,26891561-26891757,
26892215-26892266,26893530-26893795,26894007-26894229,
26895154-26895327,26895408-26895485,26895566-26895817,
26896138-26898204,26899477-26901322,26901474-26901574,
26902179-26902535,26902681-26902799,26903558-26903559,
26903630-26903662,26903709-26903841,26904285-26904537,
26905688-26905912,26906401-26906466,26907373-26907471,
26908528-26908545,26908546-26908893,26909878-26910354
Length = 2522
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 316 NINYRLYYEADKQSKYLENNGESSKGIDSHTE 411
N+N + Y QS +L N +SKGI HTE
Sbjct: 467 NLNGLVLYHICSQSSHLYANNIASKGIQIHTE 498
>06_03_1318 - 29282562-29282566,29282727-29282810,29282913-29283380,
29283735-29283917,29284362-29284467,29284627-29284651,
29284736-29284855,29284920-29284997,29285646-29285774,
29285976-29285989,29286168-29287944,29288344-29288489,
29288921-29291029
Length = 1747
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -1
Query: 560 LCSLDEDSFSFLDLTPLNNGV*VFPPDFPNGTKEFDNFLNDPFL 429
+ ++ SF FL P N P DF T+ DN+ PFL
Sbjct: 1688 ILDIESSSFGFLSQLP-RNFFSDLPEDFSQSTEILDNYGKSPFL 1730
>03_02_0901 +
12267042-12267182,12267949-12268095,12268163-12268253,
12268367-12268485,12268779-12268969,12269440-12269650,
12270072-12270309,12270944-12271329,12271933-12271956,
12271984-12272077,12272341-12272525,12273025-12273255,
12273665-12273730,12273816-12274034,12274764-12275003,
12275244-12275423,12276269-12276535,12276612-12276815,
12276896-12277048
Length = 1128
Score = 28.3 bits (60), Expect = 7.1
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
Frame = +1
Query: 196 KIPYKPEKSGGNDDDYEIVSFDDFSDKSPGSKTDLLTLN---DNINYRLYYEADKQSKYL 366
K + ++ ND D E V DF D G + D T + N Y++ K+ +
Sbjct: 657 KAALRGQEINENDVDDEEVD-GDFEDLETGEEVDNDTKKSKREETNGGGYFDKLKEEIEI 715
Query: 367 ENNGESSK--GIDSHTETSLNGARNGSFRKLSNSFVPF 474
S+ +D T + G R GS+ +L VPF
Sbjct: 716 RKQMNISELNDLDEDTRVEIEGFRTGSYIRLEVHGVPF 753
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +1
Query: 319 INYRLYYEADKQSKYLENNGESSKGIDSHTETSLNGARNGSFRKLSNSFVPFGKSGGKT 495
+N+++ + +EN ESS ++ E L + G F+ S + GGKT
Sbjct: 19 LNWKIEWNPLSFEAKMENGLESSVSFEAKLENRLESSNPGQFKVYSGGLAWKRQGGGKT 77
>12_02_1268 + 27458823-27460046
Length = 407
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 220 SGGNDDDYEIVSFDDFSDKSPGS-KTDLLTLNDNINYRL 333
+GGNDDD E S D SD S S + D L + +++ L
Sbjct: 362 AGGNDDDDESSSSSDDSDSSSDSEEQDKLAVVTKLDFSL 400
>09_03_0156 - 12844549-12845138,12845237-12845723
Length = 358
Score = 27.9 bits (59), Expect = 9.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 670 ASYWAVGGTIGGSWGEEHYXKL 735
A YW + + G SWGE Y ++
Sbjct: 314 AKYWTIKNSWGQSWGERGYIRI 335
>08_01_0382 - 3402015-3403604
Length = 529
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 676 YWAVGGTIGGSWGEEHYXKLWERTHPENV 762
+WA+ G GGSWG + KL P NV
Sbjct: 222 FWAICGGGGGSWGVVYAWKLRLVPVPHNV 250
>01_01_0469 -
3456067-3456123,3456414-3456565,3456649-3456779,
3456846-3458036,3458460-3458541,3458947-3458984,
3459091-3459250,3459356-3459557,3460245-3460329,
3460809-3460863,3461230-3461325,3461807-3461940,
3462031-3462043,3462315-3462419,3462935-3463121
Length = 895
Score = 27.9 bits (59), Expect = 9.4
Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 1/136 (0%)
Frame = +1
Query: 187 KMPKIPYKPEKSGGNDDDYEIVSFDDFSDKSPGSKTDLLTLNDNINYRLYYEADKQSKYL 366
K P + + E++ N+ D +SFD+ + D ++L DN+ + D Q
Sbjct: 404 KKPSLSVECEENKMNEKDDFHISFDNLDIPKMDAHLDGVSLFDNLEEH-HKRTDDQ---- 458
Query: 367 ENNGESSKGIDSHTETSLNGARNGSFR-KLSNSFVPFGKSGGKTHTPLFSGVXXXXXXXX 543
NN E+ D TE R S R L F +G + TH +G+
Sbjct: 459 -NNLEAGYWSDKATEK--QRTREPSCRLSLKEKFSNWGSTSPTTHWKGQTGLSNPSSCTV 515
Query: 544 XXREHRYQRFSENSTF 591
+ + SE ST+
Sbjct: 516 LHEDKPFNSASEMSTY 531
>01_01_0185 -
1570942-1571178,1571525-1571656,1571737-1571816,
1571919-1572048,1572136-1572268,1572376-1572497,
1572612-1572749,1572898-1572918,1573493-1573678,
1574576-1574713,1575068-1575532
Length = 593
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +1
Query: 730 KLWERTHPENV 762
KLWER HPENV
Sbjct: 469 KLWERLHPENV 479
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,300,883
Number of Sequences: 37544
Number of extensions: 427038
Number of successful extensions: 1156
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -