Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_C05
(764 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4471| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_41599| Best HMM Match : PRP1_N (HMM E-Value=4.3) 29 4.1
SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15) 28 7.2
SB_13629| Best HMM Match : Extensin_2 (HMM E-Value=0.35) 28 7.2
SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43) 28 7.2
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_612| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_39073| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_21574| Best HMM Match : T-box (HMM E-Value=0) 28 7.2
SB_43930| Best HMM Match : ANF_receptor (HMM E-Value=0) 28 9.5
SB_28132| Best HMM Match : Peptidase_C1 (HMM E-Value=4.8e-09) 28 9.5
SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0) 28 9.5
SB_1587| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_46673| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 28 9.5
>SB_4471| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 331
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 676 YWAVGGTIGGSWGEEHYXKLWERTH 750
YW V + G SWGEE Y K+ H
Sbjct: 293 YWLVKNSWGPSWGEEGYIKIARNDH 317
>SB_41599| Best HMM Match : PRP1_N (HMM E-Value=4.3)
Length = 278
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +1
Query: 226 GNDDDYEIVSFD-DFSDKSPGSKTDLLTLNDNINYRLYYEADKQSKYLENNGESSKGIDS 402
G +DD E++ D DFS+ + + +D Y DK+ L+N + G +
Sbjct: 130 GTEDDSELMYADIDFSNAKNKDNNKIPSNDDKTLYADITSFDKKGNTLKNGDAPTNGQST 189
Query: 403 HTETSLNGARNGS 441
+ +TS + S
Sbjct: 190 NRQTSSTNGQTSS 202
>SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)
Length = 924
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +1
Query: 664 SLASYWAVGGTIGGSWG 714
SL+S WA GGT G WG
Sbjct: 848 SLSSSWASGGTSGNVWG 864
>SB_13629| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
Length = 487
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 205 YKPEKSGGNDDDYEIVSFDDFSDKSPGSKTD 297
Y ++ G D + + D ++DK PG++TD
Sbjct: 203 YPVTRTDGYTDKHPVTRTDGYTDKHPGTRTD 233
>SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43)
Length = 607
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 229 NDDDYEIVSFDDFSDKSPGSKTDLLTLNDNINYRLYYEADKQSKYLENNGESSK 390
ND+ + + D+ +D ++ T NDN N +Y + Y +N+ ++SK
Sbjct: 271 NDNSNDHIYNDNSNDHIYNDNSNDHTYNDNSNDHIYNDNSNDHIYNDNSNDNSK 324
>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2248
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = +1
Query: 253 SFDDFSDKSPGS-KTDLLTLNDNI--NYRLYYEADKQSKYLENNGESSKGIDSHTETSLN 423
SF D SDKS GS TD ++ + ++ + +Y AD SK + + ++ ++ + +
Sbjct: 824 SFSDSSDKSSGSDNTDKMSSDKSVKQDSSIYANADMSSKVPDKGSDRNETAKVQSDKATS 883
Query: 424 GARNGS 441
+GS
Sbjct: 884 ENNSGS 889
>SB_612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 289 KTDLLTLNDNINYRLYYEADKQSKYLENNGESS 387
KT LN+++ +YY +K YLENN E S
Sbjct: 125 KTTASELNESLGLGIYY-GNKFEHYLENNAEHS 156
>SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1266
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +1
Query: 370 NNGESSKGIDSHTETSLNGARNGSFRKLSNSFVPFGKSGGKT 495
+ E SK I SH TSL +R+ S R L V KSG K+
Sbjct: 443 DQSERSKSIASHASTSL--SRSSSKRSLGRRSVESRKSGRKS 482
>SB_39073| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 220 SGGNDDDYEIVSFDDFSDKSPGSKTDLLTLNDNINY 327
+G DDD +++ D SD G D + ++D+ NY
Sbjct: 158 NGDEDDDDDVLVVVDDSDDGVGDDNDKVVVDDSDNY 193
>SB_21574| Best HMM Match : T-box (HMM E-Value=0)
Length = 473
Score = 28.3 bits (60), Expect = 7.2
Identities = 9/34 (26%), Positives = 20/34 (58%)
Frame = -2
Query: 745 FSPIVSXNAPRPRTHRWYRRLPNNLQGTTRTTRL 644
+ PI++ + + R+Y ++PNN+ T + R+
Sbjct: 366 YEPIINIGSSINQNTRYYEQIPNNVSSTNQNPRI 399
>SB_43930| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 915
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = +1
Query: 316 NINYRLYYEADKQSKYLENNGESSKGIDSHTETSLNGARNGSFRKLSNSFVPFGKSG 486
N+ +Y A L+ N SSK + L +N SF LS S V F K+G
Sbjct: 407 NVMDAVYSVAYAVQALLKENTNSSKKTTISPKQLLGYIKNTSFAGLSGSVVSFDKNG 463
>SB_28132| Best HMM Match : Peptidase_C1 (HMM E-Value=4.8e-09)
Length = 160
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 622 TGSSVLAIILLCGLSLASYWAVGGTIGGSWGEEHYXKL 735
T +VL I S ASYW + + G WGE Y ++
Sbjct: 69 TNHAVLTIGYGSQHSNASYWLIKNSWGHLWGENGYIRI 106
>SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0)
Length = 1705
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +1
Query: 334 YYEADKQSKYLENNGESSKGIDSHTETSLNGARNGSFRKLSN 459
Y++ DK+S YLE+N E S + T +G+R + +K +N
Sbjct: 241 YHKKDKESIYLESNKEQSNTV--ITTLKEHGSRIANSQKTAN 280
>SB_1587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1497
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 337 YEADKQSKYLENNGESSKGIDSHTET 414
YEAD + E +G S+K DSH T
Sbjct: 472 YEADLLEELQEKSGASAKSTDSHVST 497
>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 7645
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = -1
Query: 704 PPMVPPTAQ*LARDNPHNKIMASTLEPVPGIISQTLCINVL 582
P M+P + D K++ S++EP +IS +N++
Sbjct: 6484 PVMIPINEDKIVEDTETFKLLLSSIEPTVTVISNQTIVNII 6524
>SB_46673| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 27.9 bits (59), Expect = 9.5
Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Frame = +1
Query: 187 KMPKIPYKPEKSGGNDDDYEIVSFD--DFSDKSPGSKTDLLTLNDNINYRLYYEADKQSK 360
+M K + N+ +Y S++ D ++ S + + N+N N Y E D +
Sbjct: 2 RMKTTTMKMTFNNSNNKNYNNNSYNENDNNNNSDNKNDNNNSDNENDNNNSYNENDNSNS 61
Query: 361 YLEN-NGESSKGIDSHTETSLNGARNGSFRKLSNSFVPFGKSGGKTHT 501
EN N S+ D++ + N N + +N+ + K+ T T
Sbjct: 62 DNENDNNNSNNENDNNNSNNENDNNNSNNESDNNNIISITKTTVNTST 109
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 220 SGGNDDDYEIVSFDDFSDKSPGSKTDLLTLNDNINYR 330
S G DD S D S KTDLL N+N+N++
Sbjct: 619 SVGTDDVISDTSDGDSLYTSETCKTDLLNTNNNVNWK 655
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,950,646
Number of Sequences: 59808
Number of extensions: 507485
Number of successful extensions: 1411
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1410
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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