Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_C04
         (869 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    24   1.8  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    24   1.8  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = +1

Query: 556 ILVLLFNSILSYELS--IALNR*RF 624
           +LV++FNS LSY+ S  + + R RF
Sbjct: 168 LLVMIFNSALSYKASEIVVMLRSRF 192



 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 532 IEPTEIFSDCSFQCTRCNSDSNGL 461
           ++  +IF   +F CTR N  S+ L
Sbjct: 18  LQHNQIFGFVTFTCTRSNFRSSKL 41


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = +1

Query: 556 ILVLLFNSILSYELS--IALNR*RF 624
           +LV++FNS LSY+ S  + + R RF
Sbjct: 186 LLVMIFNSALSYKASEIVVMLRSRF 210



 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 532 IEPTEIFSDCSFQCTRCNSDSNGL 461
           ++  +IF   +F CTR N  S+ L
Sbjct: 36  LQHNQIFGFVTFTCTRSNFRSSKL 59


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,045
Number of Sequences: 336
Number of extensions: 4300
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 23996456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)