Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_C04
         (869 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0066 - 11081446-11081544,11081639-11081846,11083122-110832...    30   2.1  
02_03_0221 - 16554910-16555560                                         29   3.7  
08_02_0497 - 17811413-17811529,17811644-17811724,17812693-178128...    29   4.8  
06_03_0436 + 20755816-20756025,20756124-20756240,20756942-207571...    29   6.4  
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881...    29   6.4  
12_01_0849 + 7948693-7948996,7949829-7950610                           28   8.5  
11_06_0184 - 21006659-21009823                                         28   8.5  

>06_02_0066 -
           11081446-11081544,11081639-11081846,11083122-11083257,
           11083339-11083541,11083616-11083765,11083848-11083964,
           11084623-11085119
          Length = 469

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +3

Query: 177 STKSASVQ*PDTARSIPGRSFRRPRAPPAVRYSCP--GTTNGP 299
           S + A ++   +A S+ GRSF  P A    RYS P   T+NGP
Sbjct: 338 SRRQAKLEAAASAASLYGRSFAYPPANNLNRYSTPPQSTSNGP 380


>02_03_0221 - 16554910-16555560
          Length = 216

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +1

Query: 388 ALLLCLIGCCPCACIPYC-TDSCKDA 462
           AL  CL+G C   C   C TDS +DA
Sbjct: 78  ALTACLVGACALCCFLLCFTDSYRDA 103


>08_02_0497 -
           17811413-17811529,17811644-17811724,17812693-17812815,
           17812945-17813193
          Length = 189

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 174 ASTKSASVQ*PDTARSIPGRSFRRPR-APPAVRYSCPG 284
           A   +AS+     A ++PGR+FR PR + P    SC G
Sbjct: 2   AMAAAASLLPASAAPTLPGRAFRPPRNSTPTASLSCDG 39


>06_03_0436 +
           20755816-20756025,20756124-20756240,20756942-20757137,
           20757393-20757544,20757653-20757736,20757848-20757925,
           20757958-20758116,20758219-20758251,20759119-20759826,
           20759917-20759998,20760093-20760449,20760586-20760692,
           20760796-20761001,20761480-20761623,20761715-20761800,
           20762120-20762283,20762559-20763119
          Length = 1147

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 505 NR*IFQLVQLIINCKNNILVLLFNSILSYELSI 603
           NR +F  VQ +  CK N +  L+  IL+Y+L I
Sbjct: 627 NRKLFNEVQELKGCKANSIAHLYADILNYQLLI 659


>02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,
            8812361-8812492,8812681-8812864,8813002-8813135,
            8813552-8813656,8813738-8813839,8813930-8814022,
            8814136-8814456,8814595-8814696,8814791-8814853,
            8815213-8815708,8815964-8816124,8816213-8816743,
            8817077-8817118,8817203-8817334,8817639-8817703,
            8817858-8818169,8818262-8818334,8818425-8818517,
            8819440-8819501,8819740-8819809
          Length = 1777

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +3

Query: 162  GLRTASTKSASVQ*PDTARSIPGRSFRRPRAPPAVRYSCPGTTNGP*AHEH*LP 323
            GL  A+T +  V  P+ A  +PG+S R P   PA       +  G  A  H LP
Sbjct: 1621 GLTEANTFATRVMNPNAAEFVPGQS-RSPNGNPASPNGPLASPGGTEASPHGLP 1673


>12_01_0849 + 7948693-7948996,7949829-7950610
          Length = 361

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 28/73 (38%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = +3

Query: 204 PDTARSIPGRSFRRPRAPPAVRYSCPG--TTNGP*AHEH*LPFMQCGNRHQSRSRASD*N 377
           P   RS  G  FRR RAP  V  S  G   +  P A     P   C    + RS +S   
Sbjct: 281 PPPHRSSFGNPFRRARAPADVAISSSGIAASRLPSATPPLHPNPACVRYRRLRS-SSLTT 339

Query: 378 PPVCFASLPNRLL 416
           PPV  +SLP R L
Sbjct: 340 PPVGRSSLPARRL 352


>11_06_0184 - 21006659-21009823
          Length = 1054

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 394 LLCLIGCCPCACIPYCTDSCKDANHYCPNCNAYIGSYNR*IFQLVQLIIN 543
           LL  + C  CA +  CT+  K A + C N +A  G   + I+ LV + +N
Sbjct: 443 LLTSMSCSDCAVV-LCTNDSKMAKYCCSNDSANDGP--QIIYSLVDIYLN 489


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,042,086
Number of Sequences: 37544
Number of extensions: 412760
Number of successful extensions: 1059
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)