Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_C03
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub...    33   0.054
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    32   0.072
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    29   0.67 
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    28   1.2  
SPBC1539.10 |||ribosome biogenesis protein Nop16 |Schizosaccharo...    28   1.5  
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma...    28   1.5  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   8.2  
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    25   8.2  

>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
           subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 490

 Score = 32.7 bits (71), Expect = 0.054
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +2

Query: 230 WNNKKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQIDSDEE 376
           W  KK S  NL E G  S   K   +PN +     RA    +++D DEE
Sbjct: 222 WFMKKESEENLAEAGSASPMYKLKTVPNARPVTGPRASGSDDELDYDEE 270


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 32.3 bits (70), Expect = 0.072
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +2

Query: 359 IDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKRK 460
           ID +E VET+   P KKE  +K EK+ +  +K++
Sbjct: 445 IDVEETVETISEKPSKKEKKDKKEKKKEKSKKKR 478


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +2

Query: 473 KGQVEFITYLLDKYGNDYKAMERDKKNYYQETWKQLRSKIKTFMGIPAQYS 625
           K   +F+ Y+ +   ND KAM  ++KNY+ +  K L S+ + F+   A  S
Sbjct: 365 KPSFDFLKYITEST-NDIKAMTGEQKNYFLQIKKFLSSR-EPFIDFSANIS 413


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 600 SWVYLHSIVYTCRKEECW 653
           +W Y HS+V+     ECW
Sbjct: 622 TWYYRHSLVFVSSSNECW 639


>SPBC1539.10 |||ribosome biogenesis protein Nop16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +2

Query: 164 RRRMNRKQKST--GNVQCSIVKEAWNNKKTSARNLREMGLVSDPN 292
           RR  N+K K+   GN    ++++ W+   T  +N   +GL++ PN
Sbjct: 19  RRNANKKAKAKIYGNF---VIQQNWDKHATLRQNYARLGLLATPN 60


>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = +2

Query: 287 PNKTIKIPNFKQTQIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAK 442
           P   +K  +     +++    V ++DS+E+ E+     P++E  + +EK  K
Sbjct: 36  PATVLKYLHEDSIYVEQPMNTVEEVDSEEDEESAPAYYPEREAIQLIEKAIK 87


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 534 WKETKRIIIRKLGNNCDLK*KHSWVY 611
           WK+    II ++  NC L  + SW++
Sbjct: 698 WKQANMSIITQIYLNCSLDLRDSWMF 723


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
 Frame = +2

Query: 182 KQKSTGNVQCSIVKEAWNNKKTSARN--LREMGLVSDPNKTI-KIPNFKQTQIQRAKQMV 352
           K+KS G+     ++ A  NK     N   +E  + +D   T    P+ +   ++ A + V
Sbjct: 324 KKKSKGSALMVDIEAADINKTEENINNQFQEASVTADNMNTWDNTPSVEN--VESANENV 381

Query: 353 NQIDSDEEVETVVRLPPKKEVAEKLEKQAKAP 448
           N  ++DE+++  ++   +   A ++EK A+ P
Sbjct: 382 NNHNADEQMDEKIKSLVEGNSAYEIEKGAQEP 413


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,497,817
Number of Sequences: 5004
Number of extensions: 46209
Number of successful extensions: 169
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)