Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_C02
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   1.9  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   3.3  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.7  

>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = +2

Query: 365 LYKHILHNYLPMYLSI----IQHCVYCIDVTQIIFDLYXEFLKLXS 490
           + + +L N +P+ + +    + H VYCI+  QI+   Y + + L S
Sbjct: 426 ILESVLDNSVPVPVDVASVSLNHFVYCIERLQIVSPSYEDIISLWS 471


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -2

Query: 196 SEEHPSFL*SVASDLLPWPQPGVNVS*ASQTNKAADQNQHKYQS 65
           +E  P F   VA+ + P P P  NV+  S ++ + + + H   S
Sbjct: 20  TEYTPGFTTDVATTVTPTPLPSANVTTTSFSSASTETSTHSVTS 63


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -1

Query: 188 ASIVSVVGGLRSLALAPTWSKRQLSFADQQGSGPESTQVPKRDPLSSXSSF 36
           +S  S++    S + +PT +   +S +    S P ST        SS SSF
Sbjct: 267 SSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSF 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,550,192
Number of Sequences: 5004
Number of extensions: 48699
Number of successful extensions: 105
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)