Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_B23
(543 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe... 105 4e-24
SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyce... 36 0.003
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 30 0.19
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 1.4
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 27 2.4
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe... 25 5.5
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 25 7.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.5
>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 182
Score = 105 bits (252), Expect = 4e-24
Identities = 45/109 (41%), Positives = 72/109 (66%)
Frame = +3
Query: 141 EQXVGVNRLYIFLGLVAFTGLYLXFGFGAELICNSIGFVYPAYMSXKALESPHKDDDTKW 320
E+ GV++LY+FL L+L +G L+ N + F PA+ S A+E+ +K DDT+W
Sbjct: 28 EKNFGVSKLYVFLTAAGIYALFLFLNWGGFLLTNLLAFAMPAFFSINAIETTNKADDTQW 87
Query: 321 LTYWVVYACFPIVEYFSDFIVGWFPLYWLLKCIFVIWCYLPTEYNGSLV 467
LTY++V + ++EY+S I+ + P+YWLLK IF+IW LP ++NG+ +
Sbjct: 88 LTYYLVTSFLNVIEYWSQLILYYVPVYWLLKAIFLIWLALP-KFNGATI 135
>SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 36.3 bits (80), Expect = 0.003
Identities = 13/56 (23%), Positives = 23/56 (41%)
Frame = +3
Query: 300 KDDDTKWLTYWVVYACFPIVEYFSDFIVGWFPLYWLLKCIFVIWCYLPTEYNGSLV 467
+++ + + YW VY C E + W P Y K +F +W P + +
Sbjct: 97 EEERRRLMAYWCVYGCVTAAESILGRFLSWVPFYSTSKIVFWLWLLNPRTQGAAFI 152
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 30.3 bits (65), Expect = 0.19
Identities = 21/100 (21%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Frame = +3
Query: 150 VGVNRLYIFLGLVAFTGLYLXFGFGAELICNSIGFVYPAYMSXKAL-ESPHKDDDTKWLT 326
+G+ R +F L ++ + G ++ ++P+ +S AL + H +D+TK
Sbjct: 207 IGIGRAILF-NLCSYLSSFGWSGLALPILVYPPTLIWPSVLSSCALFKIFHDNDNTKACN 265
Query: 327 YWVVYACFPIVEYFSDFIVGWFP--LYWLLKCI--FVIWC 434
+ + + + + + FI WFP ++ L + ++ WC
Sbjct: 266 WTISRLRYFFIVFVASFIWYWFPDLIFPALSSLGAWISWC 305
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Frame = +3
Query: 327 YWVVYACFPIVEY----FSDFIVGWFPLYWLLKCI-FVIWCY 437
+W+ + C+P V + S +GW LY L C +++ CY
Sbjct: 433 FWLGWTCYPSVHWAAPMVSGIFLGWGFLYVLAVCYSYLVDCY 474
>SPAC20G8.04c |||mitochondrial electron transfer
flavoprotein-ubiquinone
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 208 KYKPVNATKPKKMYNLFTPTXCSASS 131
KYKP+N KP + + PT S S+
Sbjct: 516 KYKPINYPKPDNVLSFDIPTSVSRSA 541
>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 345 CFPIVEYFSDFIVGWFPLYWLLKC 416
C ++EYF F + LY LL C
Sbjct: 337 CLRVIEYFRRFGYNDYQLYLLLSC 360
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 25.0 bits (52), Expect = 7.2
Identities = 22/94 (23%), Positives = 40/94 (42%)
Frame = -3
Query: 385 PTMKSEKYSTIGKQAYTTQYVSHFVSSSLCGDSRAXIDMYAGYTKPIELHINSAPXPNXK 206
P+ K++ YS + K+ T + F ++ + + Y +L + SA N
Sbjct: 122 PSYKAKTYSLV-KEYKGTTFFDGFDFMNITDPTHGFVQ-YLDRNSSAKLGLISANSSNV- 178
Query: 205 YKPVNATKPKKMYNLFTPTXCSASSKYFVHGLLL 104
+ A K Y+ P+ S++YF HGL +
Sbjct: 179 ---IMAADSKHNYSSGRPSIRLQSTQYFEHGLFI 209
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 24.6 bits (51), Expect = 9.5
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = -3
Query: 409 NSQYNGNQPTMKSEKYSTIGKQAYTTQYVSHFVSSSLCGDSRAXIDMYAGYTKPIELHIN 230
+S + +QP++ S ST A T+ S+ SSS+ S + + L +
Sbjct: 179 SSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTS 238
Query: 229 SAP 221
S P
Sbjct: 239 SIP 241
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,194,967
Number of Sequences: 5004
Number of extensions: 44079
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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