Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_B23
(543 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0392 + 17131839-17131943,17134182-17134258,17134385-171344... 72 3e-13
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 70 1e-12
11_06_0315 + 22318155-22318210,22319743-22319769,22319868-223199... 66 2e-11
02_05_0743 + 31425827-31425888,31426733-31426759,31426840-314269... 60 8e-10
08_02_0954 + 22989780-22989883,22989980-22990160,22990218-22990316 58 3e-09
06_01_0865 - 6571056-6571190,6571737-6571977,6572279-6572401,657... 58 3e-09
07_03_0945 - 22791754-22791863,22792295-22792367,22792457-227925... 58 5e-09
10_02_0078 - 4992019-4992594,4993156-4993248,4995984-4996202,499... 58 6e-09
03_02_0377 - 7898075-7898605,7900782-7901000,7901079-7901142,790... 55 3e-08
09_04_0341 + 16820890-16820993,16821082-16821269,16821412-16821416 54 7e-08
09_06_0070 - 20670387-20670473,20672418-20672645,20673388-206735... 50 1e-06
02_01_0163 + 1135592-1135623,1135718-1135816,1135904-1135960,113... 50 1e-06
11_01_0354 + 2665570-2665601,2665796-2665894,2667158-2667202,266... 40 0.002
08_02_0501 + 17836948-17837373,17837857-17839184,17839270-178393... 32 0.26
09_02_0511 - 10079180-10079355,10079656-10079722,10080144-100801... 31 0.45
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948... 31 0.59
01_05_0148 + 18609853-18610058,18610347-18612669 28 4.2
01_05_0482 + 22614097-22614729,22614859-22615182,22615291-226153... 28 5.5
01_03_0306 + 14875755-14876822 27 7.3
05_04_0149 - 18441561-18442082,18442723-18442861,18443295-184433... 27 9.7
>11_04_0392 +
17131839-17131943,17134182-17134258,17134385-17134411,
17134512-17134634,17134738-17134981,17135081-17135098
Length = 197
Score = 72.1 bits (169), Expect = 3e-13
Identities = 26/67 (38%), Positives = 44/67 (65%)
Frame = +3
Query: 243 SIGFVYPAYMSXKALESPHKDDDTKWLTYWVVYACFPIVEYFSDFIVGWFPLYWLLKCIF 422
++ +YP Y S +A+ESP K DD +WL YW++Y+ +VE + ++ W P+++ LK +F
Sbjct: 63 TVMLLYPLYASVQAMESPSKLDDEQWLAYWILYSFITLVEMLLESLIYWIPIWYELKLLF 122
Query: 423 VIWCYLP 443
+ W LP
Sbjct: 123 IAWLALP 129
>01_06_0575 - 30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 69.7 bits (163), Expect = 1e-12
Identities = 31/77 (40%), Positives = 46/77 (59%)
Frame = +3
Query: 231 LICNSIGFVYPAYMSXKALESPHKDDDTKWLTYWVVYACFPIVEYFSDFIVGWFPLYWLL 410
L+ I +YP Y S +A+ESP DD +WLTYWV+Y+ + E ++ WFPL+ +
Sbjct: 897 LVGPGIMLLYPLYASMRAIESPSTLDDQQWLTYWVLYSLITLFELSCWKVLQWFPLWPYM 956
Query: 411 KCIFVIWCYLPTEYNGS 461
K +F W LP +NG+
Sbjct: 957 KLLFCCWLVLPI-FNGA 972
>11_06_0315 +
22318155-22318210,22319743-22319769,22319868-22319990,
22320867-22321110,22321487-22321981
Length = 314
Score = 66.1 bits (154), Expect = 2e-11
Identities = 28/72 (38%), Positives = 41/72 (56%)
Frame = +3
Query: 246 IGFVYPAYMSXKALESPHKDDDTKWLTYWVVYACFPIVEYFSDFIVGWFPLYWLLKCIFV 425
+ YP Y S KA+E+ DD +WLTYWV+Y+ + E I+ W P + +K IF+
Sbjct: 22 VALAYPLYASVKAIETKSPVDDQQWLTYWVMYSLITLFELTFASIIQWLPFWPSMKLIFI 81
Query: 426 IWCYLPTEYNGS 461
W LP +NG+
Sbjct: 82 CWLVLP-YFNGA 92
>02_05_0743 +
31425827-31425888,31426733-31426759,31426840-31426962,
31427252-31427492,31427655-31427780
Length = 192
Score = 60.5 bits (140), Expect = 8e-10
Identities = 26/72 (36%), Positives = 39/72 (54%)
Frame = +3
Query: 246 IGFVYPAYMSXKALESPHKDDDTKWLTYWVVYACFPIVEYFSDFIVGWFPLYWLLKCIFV 425
+ YP Y S +A+E+ DD +WLTYWV+Y+ + E ++ W PL+ K F
Sbjct: 24 VSLAYPLYASVRAIETKSAVDDQQWLTYWVLYSFITLFELTFSPVLEWLPLWSYAKLFFN 83
Query: 426 IWCYLPTEYNGS 461
W LP +NG+
Sbjct: 84 CWLVLP-YFNGA 94
>08_02_0954 + 22989780-22989883,22989980-22990160,22990218-22990316
Length = 127
Score = 58.4 bits (135), Expect = 3e-09
Identities = 21/59 (35%), Positives = 40/59 (67%)
Frame = +3
Query: 285 LESPHKDDDTKWLTYWVVYACFPIVEYFSDFIVGWFPLYWLLKCIFVIWCYLPTEYNGS 461
+ESP K DD +WL YW++Y+ ++E ++ ++ W P+++ +K +FV W LP ++ G+
Sbjct: 1 MESPTKVDDEQWLAYWILYSFITLLEMVAEPVLYWIPVWYPVKVLFVAWLVLP-QFKGA 58
>06_01_0865 -
6571056-6571190,6571737-6571977,6572279-6572401,
6572501-6572527,6573954-6574009
Length = 193
Score = 58.4 bits (135), Expect = 3e-09
Identities = 24/74 (32%), Positives = 37/74 (50%)
Frame = +3
Query: 246 IGFVYPAYMSXKALESPHKDDDTKWLTYWVVYACFPIVEYFSDFIVGWFPLYWLLKCIFV 425
+ YP Y S +A+E+ DD +WLTYWV+Y+ + E ++ W P + K F
Sbjct: 22 VSLAYPLYASVRAIETKSPVDDQQWLTYWVLYSFITLFELTFAPVIEWLPFWSYAKLFFN 81
Query: 426 IWCYLPTEYNGSLV 467
W LP + + V
Sbjct: 82 CWLVLPCFHGAAYV 95
>07_03_0945 -
22791754-22791863,22792295-22792367,22792457-22792552,
22793268-22793331,22793957-22794008,22794525-22794622,
22795108-22795166,22795981-22796013
Length = 194
Score = 58.0 bits (134), Expect = 5e-09
Identities = 27/97 (27%), Positives = 45/97 (46%)
Frame = +3
Query: 243 SIGFVYPAYMSXKALESPHKDDDTKWLTYWVVYACFPIVEYFSDFIVGWFPLYWLLKCIF 422
+IG P Y + +A+E + + +WL YW Y F I E F+D I+ P Y+ +K
Sbjct: 33 AIGVGLPVYSTFRAIEKKDQKEKERWLLYWAAYGSFSIAEIFADQILSSVPFYYHVKFAI 92
Query: 423 VIWCYLPTEYNGSLVXXXXXXXXXXQXHHGRIDDMAN 533
++W P+ +G+ H +ID + N
Sbjct: 93 LVWLQFPSN-SGAKHVYRRYMRPFFLKHQAKIDRILN 128
>10_02_0078 -
4992019-4992594,4993156-4993248,4995984-4996202,
4996282-4996345,4996429-4996485,4996573-4996671,
4997296-4997327
Length = 379
Score = 57.6 bits (133), Expect = 6e-09
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = +3
Query: 219 FGAELICNSIGFVYPAYMSXKALE--SPHKDDDTKWLTYWVVYACFPIVEYFSDFIVGWF 392
F + ++ + G+ YPAY K +E P + W YW++ A ++E F DF + W
Sbjct: 5 FLSRVLLLAFGYAYPAYECYKTVELNKPEIEKLIFWCQYWILVALLTVLERFGDFAISWL 64
Query: 393 PLYWLLKCIFVIWCYLPTEYNGSLV 467
PLY K +F I+ + P S V
Sbjct: 65 PLYSEAKLMFFIYLWCPRTKGTSYV 89
>03_02_0377 -
7898075-7898605,7900782-7901000,7901079-7901142,
7901226-7901282,7901373-7901471,7901744-7901793,
7902378-7902422,7902967-7903062
Length = 386
Score = 55.2 bits (127), Expect = 3e-08
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +3
Query: 243 SIGFVYPAYMSXKALE--SPHKDDDTKWLTYWVVYACFPIVEYFSDFIVGWFPLYWLLKC 416
+ G+ YPAY K +E P + W YW++ A ++E F DF + W P Y K
Sbjct: 66 AFGYAYPAYECYKTVELNKPEIEQLIFWCQYWILVALMTVMERFGDFTISWLPFYSEAKL 125
Query: 417 IFVIWCYLP 443
+F I+ + P
Sbjct: 126 MFFIYLWYP 134
>09_04_0341 + 16820890-16820993,16821082-16821269,16821412-16821416
Length = 98
Score = 54.0 bits (124), Expect = 7e-08
Identities = 21/59 (35%), Positives = 36/59 (61%)
Frame = +3
Query: 285 LESPHKDDDTKWLTYWVVYACFPIVEYFSDFIVGWFPLYWLLKCIFVIWCYLPTEYNGS 461
+ES K DD +WL YW++Y+ ++E ++ W PL++ K +FV W LP ++ G+
Sbjct: 1 MESTSKVDDEQWLVYWILYSLITLMEMALHKVLYWIPLWYEAKVLFVAWLVLP-QFRGA 58
>09_06_0070 -
20670387-20670473,20672418-20672645,20673388-20673508,
20673604-20673702,20673802-20673833
Length = 188
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +3
Query: 246 IGFVYPAYMSXKALE--SPHKDDDTKWLTYWVVYACFPIVEYFSDFIVGWFPLYWLLKCI 419
+G+ YPAY K LE P D W YW++ A +E + F V W P+Y K
Sbjct: 14 LGYAYPAYDCYKTLELNKPQIDQLRFWCQYWILLAFLTTLETITYFTVSWLPMYGEAKLA 73
Query: 420 FVIWCYLP 443
V++ + P
Sbjct: 74 LVLYLWYP 81
>02_01_0163 +
1135592-1135623,1135718-1135816,1135904-1135960,
1136053-1136116,1136174-1136392,1138562-1138945
Length = 284
Score = 50.0 bits (114), Expect = 1e-06
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +3
Query: 246 IGFVYPAYMSXKALE--SPHKDDDTKWLTYWVVYACFPIVEYFSDFIVGWFPLYWLLKCI 419
+G+ YPAY K +E P + W YW++ A + E D V W P+Y K
Sbjct: 14 LGYAYPAYDCYKTVELNRPEVEQLRFWCQYWILLAVLTVFERVGDNFVSWLPMYSEAKLA 73
Query: 420 FVIWCYLP 443
F+++ + P
Sbjct: 74 FIVYLWYP 81
>11_01_0354 +
2665570-2665601,2665796-2665894,2667158-2667202,
2667293-2667356,2667497-2667709,2669960-2670160
Length = 217
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = +3
Query: 249 GFVYPAYMSXKALESPHKDDDTKWLTYWVVYACFPIVEYFSDFIVGWFPLYWLLKCIFVI 428
G+ PA+ K LE+ + DD L +W Y + + V W P+Y +K F +
Sbjct: 15 GYAMPAFECFKTLET--RPDDAHMLRFWCQYWIIVSMVIACESFVSWMPMYGEIKLAFFV 72
Query: 429 WCYLPTEYNGSLV 467
+ + P +V
Sbjct: 73 YLWYPKTKGSDVV 85
>08_02_0501 + 17836948-17837373,17837857-17839184,17839270-17839380,
17839719-17839998,17840275-17840396,17840451-17840556,
17840814-17841020,17841130-17841255,17841719-17841817,
17842265-17842456,17842555-17843073
Length = 1171
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Frame = +3
Query: 318 WLTYWVVYACFPIVEYFSDFIVGW-----FPLYWLLKCIFVIWCYLP 443
W T+ V+Y FP S + V W PLYWL + V+ +P
Sbjct: 1095 WYTFLVIYGSFPPTISTSAYHVFWEACASSPLYWLSTLVIVVTALIP 1141
>09_02_0511 -
10079180-10079355,10079656-10079722,10080144-10080181,
10080255-10080336
Length = 120
Score = 31.5 bits (68), Expect = 0.45
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 348 FPIVEYFSDFIVGWFPLYWLLKCIFVI 428
FP +S+ IV WFP++ CIFVI
Sbjct: 78 FPFFLVYSNGIVQWFPVFEYWSCIFVI 104
>01_03_0303 + 14792842-14792949,14793659-14793760,14794657-14794800,
14794906-14794986,14795078-14795147,14795267-14795337,
14795427-14795594,14796030-14796074,14796449-14796511,
14796594-14796869,14797858-14797971,14798099-14798225,
14798315-14798484,14798743-14798841,14799577-14799630,
14801487-14801522,14801741-14801844,14801952-14802186,
14802377-14802609,14802846-14803346,14803422-14803716,
14805796-14805881,14806952-14807064,14807303-14807385,
14808014-14808866,14809215-14809364,14809963-14811146
Length = 1854
Score = 31.1 bits (67), Expect = 0.59
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -3
Query: 427 ITKMHFNSQYNGNQPTMKSEKYSTIG-KQAYTTQYVSHFVSSSLCGDS 287
+T M FN YNG QP + +G K+A T Y S C DS
Sbjct: 1339 VTTMKFNETYNGQQPVVLDWAIGKVGCKEANMTSYACRSKHSE-CVDS 1385
>01_05_0148 + 18609853-18610058,18610347-18612669
Length = 842
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 469 ITRDPLYSVGR*HQITKMHFNSQYNGNQ 386
+ DPL S+ R +T++HF YNG +
Sbjct: 714 LKEDPLPSLSRLLNLTELHFTRAYNGEK 741
>01_05_0482 +
22614097-22614729,22614859-22615182,22615291-22615396,
22615628-22615668
Length = 367
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/74 (22%), Positives = 31/74 (41%)
Frame = -3
Query: 409 NSQYNGNQPTMKSEKYSTIGKQAYTTQYVSHFVSSSLCGDSRAXIDMYAGYTKPIELHIN 230
+ + GN ++ T+G A S + + CGDSRA + +P+ L ++
Sbjct: 261 DEEVGGNASRGEAVAPETVGSTAVVAVICSSHIIVANCGDSRAVL---CRGKQPVPLSVD 317
Query: 229 SAPXPNXKYKPVNA 188
P +Y + A
Sbjct: 318 HKPNREDEYARIEA 331
>01_03_0306 + 14875755-14876822
Length = 355
Score = 27.5 bits (58), Expect = 7.3
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = -3
Query: 427 ITKMHFNSQYNGNQPTMKSEKYSTIGKQA--YTTQYVSHFVSSSLCGDSR 284
IT M FN Y G QP + + + T Y H +S+C DS+
Sbjct: 221 ITTMRFNDTYEGQQPLVLDWAIGDVSCEVAKNMTSYACH-SGNSICVDSK 269
>05_04_0149 -
18441561-18442082,18442723-18442861,18443295-18443352,
18443630-18443664,18444528-18444886,18445304-18445450,
18445849-18447954,18448300-18448494,18448629-18448709,
18448758-18448874,18449281-18449370,18449466-18449552,
18450293-18450315,18450675-18450804
Length = 1362
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 501 FGSKDE*YGSRSPGTRCIQSAGSTRSRRCTLTASTMET 388
FGS + + + PG+R + A S SRR + ST T
Sbjct: 875 FGSSKKFFSASVPGSRIVSRATSPVSRRASPPRSTTPT 912
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,387,816
Number of Sequences: 37544
Number of extensions: 287525
Number of successful extensions: 617
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -