Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_B23
(543 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54916| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=4.76441e-44) 147 4e-36
SB_28902| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=0.088) 56 1e-08
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0) 31 0.80
SB_20155| Best HMM Match : Fe_dep_repress (HMM E-Value=2.6) 29 1.9
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 29 1.9
SB_13243| Best HMM Match : COX17 (HMM E-Value=1.7) 28 4.3
SB_5363| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_44756| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7) 27 7.5
SB_37181| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_54916| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=4.76441e-44)
Length = 210
Score = 147 bits (357), Expect = 4e-36
Identities = 66/127 (51%), Positives = 82/127 (64%)
Frame = +3
Query: 141 EQXVGVNRLYIFLGLVAFTGLYLXFGFGAELICNSIGFVYPAYMSXKALESPHKDDDTKW 320
E+ V +LY+FLGLV LYL FG+GA+LI +GF YPAY S KA+ES KDDDT+W
Sbjct: 33 EEKTKVKKLYLFLGLVGVFSLYLIFGYGADLIVTVLGFAYPAYQSVKAVESVQKDDDTQW 92
Query: 321 LTYWVVYACFPIVEYFSDFIVGWFPLYWLLKCIFVIWCYLPTEYNGSLVXXXXXXXXXXQ 500
L YWVV+A F IVE+FSD ++ WFPLY+L K IF+ WC P +NGS
Sbjct: 93 LIYWVVFASFNIVEFFSDILLSWFPLYFLTKLIFLGWCMAPVSWNGSDTLYQKVIKPFVL 152
Query: 501 XHHGRID 521
H +ID
Sbjct: 153 RHQSQID 159
>SB_28902| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=0.088)
Length = 110
Score = 56.4 bits (130), Expect = 1e-08
Identities = 28/72 (38%), Positives = 36/72 (50%)
Frame = +3
Query: 117 WTKYFELAEQXVGVNRLYIFLGLVAFTGLYLXFGFGAELICNSIGFVYPAYMSXKALESP 296
+T E V R L +V FT LY+ G+ A CN I V+P Y S A+E+P
Sbjct: 39 FTDLLRKIENFTRVPRRIQVLLMVLFTLLYVAEGYAAACFCNVIAVVFPVYASISAIENP 98
Query: 297 HKDDDTKWLTYW 332
+ TKWL YW
Sbjct: 99 DYEIGTKWLMYW 110
>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
Length = 942
Score = 30.7 bits (66), Expect = 0.80
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -3
Query: 256 TKPIELHINSAPXPNXKYKPVNATKPKKMYNLFTPTXCSA 137
T+P+ H S+P P + PVN T P TP +A
Sbjct: 225 TQPLSSHSGSSPQPGSAFSPVN-TPPNAQAQQMTPPSSAA 263
>SB_20155| Best HMM Match : Fe_dep_repress (HMM E-Value=2.6)
Length = 310
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +3
Query: 288 ESPHKDDDTKWLTYWVVYACF-PIVEYFSDF-IVGWFPLYWLLKCIFVIWCYLPTEYN 455
E P K+DD + WV+ F P+ S F IV W + L C CY T Y+
Sbjct: 209 EEPGKEDDDNTVLRWVICLIFMPLYIVISIFGIVIWLLMAPFLICSKQDSCYANTTYD 266
>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 2735
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = -2
Query: 497 VVRTNDTVVDHQGPVVFSRQVAPDHEDAL*QPVQWKPADDEIGKVLHDRKTGVHHPICKP 318
+V +VV HQ PVV R H+ + V +P ++H T V HP +P
Sbjct: 1381 IVIHRPSVVLHQAPVVVHRPAVVYHQPPV---VVHQPPPLVHQPIIHSHDTYVSHPFFEP 1437
Query: 317 F 315
F
Sbjct: 1438 F 1438
>SB_13243| Best HMM Match : COX17 (HMM E-Value=1.7)
Length = 483
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +3
Query: 267 YMSXKALESPHKDDDTKWLTYWVVYACFPIVEYFSDFIVGWFPLYWLLKCI 419
Y+ + + P K D WL + + + YF + I +F WL KCI
Sbjct: 308 YLWGQDISDPRKFLDNTWLKVFKFQPLWKVKNYFGEQIALYFA--WLGKCI 356
>SB_5363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +3
Query: 267 YMSXKALESPHKDDDTKWLTYWVVYACFPIVEYFSDFIVGWFPLYWLLKCI 419
Y+ + + P K D WL + + + YF + I +F WL KCI
Sbjct: 122 YLWGQDISDPRKFLDNTWLKVFKFQPLWKVKNYFGEQIALYFA--WLGKCI 170
>SB_44756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 27.5 bits (58), Expect = 7.5
Identities = 23/96 (23%), Positives = 39/96 (40%)
Frame = -3
Query: 415 HFNSQYNGNQPTMKSEKYSTIGKQAYTTQYVSHFVSSSLCGDSRAXIDMYAGYTKPIELH 236
+F+++ N T +EKYST + Y+T+ + + + S + Y+ TK E +
Sbjct: 208 NFSTKATENYSTKATEKYSTKASENYSTKATEKYSTKAAENYSTKATEKYS--TKATEKY 265
Query: 235 INSAPXPNXKYKPVNATKPKKMYNLFTPTXCSASSK 128
A N K K N T + S+K
Sbjct: 266 STKA-TENFSTKATENYSTKATKNYSTKAAENYSTK 300
>SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)
Length = 540
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -3
Query: 343 AYTTQYVSHFVSSSLCGDSRAXIDMY 266
A++ + VSH V S+C SRA +D++
Sbjct: 474 AFSCRCVSHHVLMSMCFPSRAHVDVF 499
>SB_37181| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 343 AYTTQYVSHFVSSSLCGDSRAXIDMY 266
A + + V H+VS S+C SR +D++
Sbjct: 185 ACSCRCVPHYVSMSMCSPSRVHVDVF 210
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,800,829
Number of Sequences: 59808
Number of extensions: 348046
Number of successful extensions: 1079
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -