Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_B22
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    51   1e-07
SPAC6B12.06c |||conserved fungal protein|Schizosaccharomyces pom...    25   6.7  

>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 50.8 bits (116), Expect = 1e-07
 Identities = 42/140 (30%), Positives = 55/140 (39%), Gaps = 6/140 (4%)
 Frame = +2

Query: 5   FSNFLGLFPYIFTRTRHXXXXXXXXXXXXXXXXXYG*IKNTNHIFIHIIPQGTPYILIPF 184
           FSN L L PY +  T                    G  ++   +F   +P GTP  LIP 
Sbjct: 106 FSNLLRLIPYGYATTAQLIFTLGLSISILIGATILGLQQHKAKVFGLFLPSGTPTPLIPL 165

Query: 185 XXXXXXXXXXXRPGTLAVRLTANIIAGHLLITLL-----RRTGTN-ISFYXXXXXXXXXX 346
                      R  +L +RL ANIIAGHL +++L        G N I+F           
Sbjct: 166 LVLIEFVSYIARGLSLGIRLGANIIAGHLTMSILGGLIFTFMGLNLITFIIGFLPITVLV 225

Query: 347 XXXXXESAVAIIQSYVITIL 406
                E  +A IQ+YV  IL
Sbjct: 226 AISLLEFGIAFIQAYVFAIL 245


>SPAC6B12.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 87  RGIDKDKDIVKCLVLVKIYGNNPKKL 10
           R + K+K  + C  L K+YG +P+ +
Sbjct: 58  RRLKKEKSSMSCSELAKLYGVSPESI 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,234,129
Number of Sequences: 5004
Number of extensions: 16675
Number of successful extensions: 43
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)