Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_B20
(858 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom... 125 7e-30
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha... 85 2e-17
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 33 0.039
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 29 0.84
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 28 2.0
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s... 28 2.0
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 27 4.5
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 26 6.0
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac... 26 6.0
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 26 7.9
>SPAC6F12.13c |fps1||geranyltranstransferase
Fps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 125 bits (302), Expect = 7e-30
Identities = 58/171 (33%), Positives = 98/171 (57%), Gaps = 1/171 (0%)
Frame = +3
Query: 342 LEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQ-IGDWLKKMLHYNLVGGKHTRGITTVIS 518
+ ++++ F+ LP + + N K +P + +W K L +N +GGK+ RG++ + S
Sbjct: 1 MSAVDKRAKFESALPVFVDEIVNYLKTINIPDDVTEWYKNSLFHNTLGGKYNRGLSVIDS 60
Query: 519 YKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSSVRRGMPCWYRRPEVGIT 698
Y+ + + E A LGW VE+ Q++ ++ DDIMD S RRG PCWY P VG
Sbjct: 61 YEIL-LGHPLDEAAYMKAAVLGWMVELLQSFFLIADDIMDASKTRRGQPCWYLMPGVG-N 118
Query: 699 CAFNDSLLIHSSLFEFLKTNFRTNPNYMKMFELFNETLWRTSMGQHLXHVT 851
A ND+ ++ S+++ LK +FR Y+ + ELF++ ++T +GQ L +T
Sbjct: 119 IAINDAFMVESAIYFLLKKHFRQESCYVDLIELFHDVTFQTELGQQLDLLT 169
>SPBC36.06c |spo9||farnesyl pyrophosphate
synthetase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 351
Score = 84.6 bits (200), Expect = 2e-17
Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 1/159 (0%)
Frame = +3
Query: 360 KKMFDDLLPEVIMTLQN-KSKLSEVPQIGDWLKKMLHYNLVGGKHTRGITTVISYKTIEK 536
KK D P V+ ++ + P+ + L + N +GGK+ RG+ + S ++
Sbjct: 12 KKRLLDFFPVVLEGIREILESMQYFPEETEKLLYSIKRNTLGGKNNRGLAVLQSLTSLIN 71
Query: 537 PEKVTEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSSVRRGMPCWYRRPEVGITCAFNDS 716
E + E + A LGW +E+ Q ++ DDIMD S RRG+ CWY VG+ A N+S
Sbjct: 72 RE-LEEAEFRDAALLGWLIEILQGCFLMADDIMDQSIKRRGLDCWYL--VVGVRRAINES 128
Query: 717 LLIHSSLFEFLKTNFRTNPNYMKMFELFNETLWRTSMGQ 833
L+ + + ++ FR P Y+ + + F E + T +GQ
Sbjct: 129 QLLEACIPLLIRKYFRNMPYYVDLLDTFREVTFLTELGQ 167
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 33.5 bits (73), Expect = 0.039
Identities = 22/66 (33%), Positives = 34/66 (51%)
Frame = +3
Query: 306 NNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQIGDWLKKMLHYNLVGG 485
N S+N T + NL+ + KK +LP +TLQ K KL G K LH +++ G
Sbjct: 254 NISSNSTVSDLNLKTL--KKRLRGVLPPSFLTLQEKKKLE---NRGVKKKTSLHKSVIEG 308
Query: 486 KHTRGI 503
+ +G+
Sbjct: 309 EKIKGV 314
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 29.1 bits (62), Expect = 0.84
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = -2
Query: 395 NYFREEIVEHF---LFINYFEIF*GCRHICAIILISDQLWPIFVCNF 264
N F ++++E+F + ++YF IF H+C+ S +W +C+F
Sbjct: 504 NSFNQKLMEYFKGFVKLDYFSIFITFLHVCSFGSNSFTVWEDRLCHF 550
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -2
Query: 419 LGFVL*CHNYFREEIVEHFLFINYFEIF*GCRHICAIILISDQLWP 282
LGF + H+Y HF+ ++ +F CR I +L S L P
Sbjct: 97 LGFCVLAHDYVNLINARHFMIEHFLSLFAFCRTILFSLLTSFLLVP 142
>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 549 TEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSSVRRGMP 665
T L +L EM ++ DD++D ++VRRG P
Sbjct: 112 TGQILPSQLRLAQITEMIHIASLLHDDVIDHANVRRGSP 150
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -2
Query: 716 RVVKGACDAHFRTPIPTGHAASDA*TIHNVIQHNAICLKHFDTPSQLTSHFQSMF 552
R++ G P+ HA S TI ++I L+ +PS+ + F+S F
Sbjct: 545 RIISGPLGLVHPDPLVASHARSSMQTIESLIHPRFPPLQKHLSPSEFENTFESRF 599
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 26.2 bits (55), Expect = 6.0
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = -3
Query: 361 FSLIISRFF-EAVVIFALLFLYLISCGQYLYV 269
FSL+IS FF +++I A+L L + SC YL++
Sbjct: 171 FSLVISWFFTHSIIISAVLPLAISSC-MYLWM 201
>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
Lac1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +2
Query: 92 LLITFSWIILRHYCLSSAVWIATWTEVLKIETY 190
++ F WI +RHY +W A W + I ++
Sbjct: 281 VIFVFVWIYMRHYLNFKIMW-AVWGTMRTINSF 312
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 426 EVPQIGDWLKKMLHYNLVGGKHTRGI 503
E+ +I D+L+ H+ +GGK RG+
Sbjct: 278 ELEEIVDFLRDPTHFTRLGGKLPRGV 303
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,611,217
Number of Sequences: 5004
Number of extensions: 78909
Number of successful extensions: 236
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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