Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_B20
         (858 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    32   0.006
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   4.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.3  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   8.3  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 32.3 bits (70), Expect = 0.006
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +3

Query: 447 WLKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCI 617
           W+   +H      +   GITTV++  TI    +     ++ A  L W + M   YCI
Sbjct: 263 WVSFWIHREATSDRVGLGITTVLTLSTISLDSRTDLPKVRYATALDWFLLMSFGYCI 319


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 751 FRNSNKELCIKRESLKAHVMPTSG 680
           FR+ +KELC  +  L   + PT G
Sbjct: 485 FRDMHKELCDGKPGLCDAMKPTKG 508


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 55  KEEDVYTTERNTPKKKKK 2
           KE+   +T+  TPKK++K
Sbjct: 779 KEQSPNSTKETTPKKERK 796


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = -2

Query: 572 SHFQSMFGDFFRFFNCFV*NHSSYSSCMFTANQIVMKHLFQPIPYLGH 429
           SHF  +FG+ F     F    S+ ++ +      V +++    P++ H
Sbjct: 116 SHFPYVFGEAFCIIQSFAAETSANATVLTITAFTVERYIAICHPFISH 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,622
Number of Sequences: 438
Number of extensions: 5862
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)