Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_B19
         (679 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    24   1.00 
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    24   1.3  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    23   2.3  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.3  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   2.3  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   9.3  

>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 24.2 bits (50), Expect = 1.00
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 325 W*SFYDFLPWV 293
           W +FYD+ PWV
Sbjct: 487 WHTFYDYRPWV 497


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 271 TWNT*SGRPMEENRRSFTTGFHMAFPKKLRCLSGGGLAELDHK 399
           T+ T + + M    + F        P+KLR   GG   E+++K
Sbjct: 91  TFETAAHKIMAGATKRFRNQIEALVPRKLRLADGGKTLEINYK 133


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/39 (25%), Positives = 15/39 (38%)
 Frame = +2

Query: 470 DCAKLMSELLKTHPVSVQEELTSYCVSLLTDDEARRCAC 586
           +C K+   +  THP     +   Y    +  D  RR  C
Sbjct: 171 ECPKVNETVAATHPRYADPDDCQYFYVCINGDTPRRSGC 209


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 197 SSMGVSCPERQGCSAERIWYAACTTLGIPEADDPWKKIVEASPPDSI 337
           S  G+S   R GC + R++Y   T L        +KKI +A PP S+
Sbjct: 261 SQTGLSPYLRFGCLSTRLFYYQLTDL--------YKKIKKAFPPLSL 299



 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 542 CVSLLTDDEARRCACWQSGPSGPP 613
           CV +  D  A   A W +G +G P
Sbjct: 328 CVQIPWDKNAEALAKWANGQTGFP 351


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 354 TALPIRRGS--GRT*SQRASMTSCSRPPSNWQSYCDTHPP 467
           ++LP +R S    T S R+ MTSCS  P+      D + P
Sbjct: 82  SSLPTQRTSTSNPTYSSRSVMTSCSSVPTTASYGSDLYFP 121


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 448 YDCQFEGGRLHDVIDALCDQVLPD 377
           YD     G + + +DA C+++ PD
Sbjct: 443 YDYGIPQGVVLNPLDARCNEIRPD 466


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,732
Number of Sequences: 336
Number of extensions: 3330
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)