Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_B19
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0346 + 2652181-2653566                                           29   4.5  
04_01_0100 + 1034057-1034308,1034962-1035078,1035152-1035382,103...    28   7.9  
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216     28   7.9  

>12_01_0346 + 2652181-2653566
          Length = 461

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/65 (26%), Positives = 26/65 (40%)
 Frame = +2

Query: 326 PDSIWHSLRNCVAYQAGVWQNLITKGIDDVMQPAAFKLAIVLRHTPTEDCAKLMSELLKT 505
           P  + H L   +A   G   + +    D+   P  F+L I      T D   L+ E  K 
Sbjct: 36  PPRVPHRLGTVIAVDLGNTNSCVAGYGDEADAPPLFRLCIPTSVAFTGDGDALVGEAAKN 95

Query: 506 HPVSV 520
           HP ++
Sbjct: 96  HPAAI 100


>04_01_0100 +
           1034057-1034308,1034962-1035078,1035152-1035382,
           1038200-1038455,1038551-1038807,1038978-1039250,
           1039617-1039898,1040045-1040165,1040351-1040520,
           1040613-1040711
          Length = 685

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 114 SCIFCDVGAAEAVRSRINWNKRSICGEN 197
           +C +  VG  + +  R+NW   S CG +
Sbjct: 612 TCRYIPVGLLDVIPQRLNWRPPSYCGRD 639


>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
          Length = 1030

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +1

Query: 76  KRKQRNRPTEPSAVVYFVTSARRKRSGLV*TGTSAQFVGRIEYGSVMP 219
           K    ++P++P+A V + TS+  + S +  +  S++ V  +   SVMP
Sbjct: 43  KENSASKPSKPTAAVRWSTSSIPRASRIPSSVESSKLVSTLRASSVMP 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,525,518
Number of Sequences: 37544
Number of extensions: 432392
Number of successful extensions: 1203
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)