Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_B18
(760 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0366 - 2867953-2868252,2868329-2868469,2868808-2869089,286... 211 4e-55
02_05_0790 - 31768131-31768269,31768343-31768503,31768845-317689... 73 2e-13
04_04_0350 + 24591002-24591123,24592020-24592091,24592343-245924... 61 8e-10
01_04_0038 - 15339047-15339230,15339683-15339741,15340031-153401... 29 4.0
01_02_0049 + 10641363-10641563,10641640-10641750,10641893-106421... 28 7.0
07_03_0124 - 13723597-13724657,13726179-13726413 28 9.3
05_07_0139 - 27968816-27968890,27969065-27969456,27969558-279696... 28 9.3
01_06_0168 + 27165323-27165373,27166659-27167067,27167666-271677... 28 9.3
>05_01_0366 -
2867953-2868252,2868329-2868469,2868808-2869089,
2869177-2869569,2869796-2869975,2870149-2871510
Length = 885
Score = 211 bits (516), Expect = 4e-55
Identities = 98/143 (68%), Positives = 115/143 (80%)
Frame = +2
Query: 332 KTPKGTRDYNPQQMTIRNNVLDKIITVFRRHGAECIDTPVFELKDVLTGKYGEDSKLIYD 511
K PKGTRD+ +QM IR + I VF+ HGA +DTPVFEL++ L GKYGEDSKLIYD
Sbjct: 451 KIPKGTRDFGKEQMAIREHAFSIITGVFKMHGAVSLDTPVFELRETLMGKYGEDSKLIYD 510
Query: 512 LKDQGGEILSLRYDLTVPLARYLAMNKITTLKRYHIAKVYRRDNPAMTRGRYREFYQCDF 691
L DQGGE+ SLRYDLTVP ARY+AMN I++LKRY IAKVYRRDNP ++GRYREFYQCDF
Sbjct: 511 LADQGGELCSLRYDLTVPFARYVAMNNISSLKRYQIAKVYRRDNP--SKGRYREFYQCDF 568
Query: 692 DIAGVYDPMVPDAXCLKVVTEIL 760
DIAGVY+ M PD +KV+TE+L
Sbjct: 569 DIAGVYETMEPDFEVIKVLTELL 591
>02_05_0790 -
31768131-31768269,31768343-31768503,31768845-31768973,
31769770-31769912,31770215-31770332,31771070-31771144,
31771528-31771620,31771750-31771879,31772038-31772126,
31772411-31772506,31772610-31772900
Length = 487
Score = 73.3 bits (172), Expect = 2e-13
Identities = 47/136 (34%), Positives = 75/136 (55%), Gaps = 4/136 (2%)
Frame = +2
Query: 311 GPQKFTLKTPKGTRDYNPQQMTIRNNVLDKIITVFRRHGAECIDTPVFELKDVLTGKYGE 490
G + P+GTRD+ P+ M +R + D+ V R E +D PV E + + K GE
Sbjct: 65 GASVVDVNPPRGTRDFPPEDMRLRTWLFDQFREVSRVMAFEEVDFPVLESEALFIRKAGE 124
Query: 491 D-SKLIYDLKDQGGEILSLRYDLTVPLAR-YLAMNKITT--LKRYHIAKVYRRDNPAMTR 658
+ ++ +Y+ +D+GG + LR ++T LAR + K + LK + I + +R + MTR
Sbjct: 125 EITQQLYNFEDKGGRRVVLRPEITPSLARLVIKQGKSVSLPLKWFTIGQCWRYER--MTR 182
Query: 659 GRYREFYQCDFDIAGV 706
GR RE YQ + DI G+
Sbjct: 183 GRRREHYQWNMDIFGM 198
>04_04_0350 + 24591002-24591123,24592020-24592091,24592343-24592448,
24593138-24593242,24593693-24593815,24594163-24594630,
24595226-24595351,24595430-24595516,24595615-24595701,
24595807-24595903,24596519-24596636,24596923-24596995,
24597504-24597566,24597666-24597832,24598444-24598631,
24598909-24599057,24599193-24599442,24599597-24599855,
24599977-24600073,24606696-24606776,24606914-24606970,
24607264-24607395,24607476-24607562,24607941-24608049,
24608134-24608270,24608841-24608945,24609566-24609654,
24609757-24609859,24609960-24610064,24610282-24610293,
24611013-24611078
Length = 1279
Score = 61.3 bits (142), Expect = 8e-10
Identities = 44/130 (33%), Positives = 68/130 (52%), Gaps = 5/130 (3%)
Frame = +2
Query: 383 NNVLDKIITV----FRRHGAECID-TPVFELKDVLTGKYGEDSKLIYDLKDQGGEILSLR 547
+ +LD II V F+RH A+ +P+ L+ T G+ K++ QGGE+L L
Sbjct: 849 SELLDSIIEVSKEVFKRHCAKRFQISPLHTLEGKFTENRGKTVKIL----TQGGEMLELC 904
Query: 548 YDLTVPLARYLAMNKITTLKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGVYDPMVPD 727
Y+L P + N+I + KRY ++ V+RR A+ F Q DFDI G P +P+
Sbjct: 905 YELRTPFVMSVVANQILSFKRYEVSWVHRR---AVGHSIPYRFLQGDFDIIGGASP-IPE 960
Query: 728 AXCLKVVTEI 757
A +KV ++
Sbjct: 961 AEIVKVTLDV 970
>01_04_0038 -
15339047-15339230,15339683-15339741,15340031-15340160,
15340248-15340498,15340632-15341225,15342050-15342511
Length = 559
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 191 IQEQGDLVRKLKAAKESNERVKEEVSKL 274
++E+GD V +LKAAK S + + V++L
Sbjct: 232 VKEKGDAVAQLKAAKASKQEITAAVAEL 259
>01_02_0049 +
10641363-10641563,10641640-10641750,10641893-10642123,
10642253-10642357,10642546-10642704
Length = 268
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +2
Query: 188 KIQEQGDLVRKLKAAKESNERVKEEVSKLLALKAQLV 298
K++EQ DLV+K AKE ++ K +++ + LK +++
Sbjct: 162 KVEEQLDLVQKFLEAKELSQLEKNQMTTVHELKKKVL 198
>07_03_0124 - 13723597-13724657,13726179-13726413
Length = 431
Score = 27.9 bits (59), Expect = 9.3
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Frame = -3
Query: 590 YSLLNT-EPKVQSN--HILMKEFLHLGLSNHRLILNPHHTSQ*AH---PLAQKLVYQYTQ 429
Y LL T EPK + IL+ L L LS + + H H L+ L Q++
Sbjct: 157 YVLLRTQEPKTMFSAFSILLGLQLALSLSTKETLPSSHRNWNICHVRTSLSDNLRKQFSN 216
Query: 428 LRVS*-KL*LFYPIHYFVLSFAV 363
LR + + +FYP+ + + SFAV
Sbjct: 217 LRTAISEEQIFYPLMWIMTSFAV 239
>05_07_0139 -
27968816-27968890,27969065-27969456,27969558-27969640,
27969841-27969933,27970012-27970223,27970604-27970753,
27971195-27971254,27971369-27971496,27972008-27972416,
27973514-27973570
Length = 552
Score = 27.9 bits (59), Expect = 9.3
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Frame = +2
Query: 449 VFELKDVLTGKYGEDSKLIY---DLKDQG-GEILSLRYDLTVPLARYLAMNKITTLKRYH 616
+ E+K ++ D K IY +L D +++ DLT ++ + LK H
Sbjct: 95 IVEIKHIMLPPSRRDFKDIYVVFELMDTDLHQVIKANDDLTKEHHQFFLYQMLRALKYIH 154
Query: 617 IAKVYRRD-NPA-MTRGRYREFYQCDFDIAGV 706
A VY RD P + + CDF +A V
Sbjct: 155 TANVYHRDLKPKNILANANCKLKICDFGLARV 186
>01_06_0168 +
27165323-27165373,27166659-27167067,27167666-27167793,
27167905-27167964,27169126-27169275,27169358-27169513,
27169643-27169854,27169983-27170084,27170351-27170430,
27170515-27170939
Length = 590
Score = 27.9 bits (59), Expect = 9.3
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Frame = +2
Query: 449 VFELKDVLTGKYGEDSKLIY---DLKDQG-GEILSLRYDLTVPLARYLAMNKITTLKRYH 616
+ E+K ++ D K IY +L D +++ DLT ++ + LK H
Sbjct: 93 IVEIKHIMLPPSRRDFKDIYVVFELMDTDLHQVIKANDDLTKEHHQFFLYQMLRALKYIH 152
Query: 617 IAKVYRRD-NPA-MTRGRYREFYQCDFDIAGV 706
A VY RD P + + CDF +A V
Sbjct: 153 TANVYHRDLKPKNILANANCKLKICDFGLARV 184
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,095,115
Number of Sequences: 37544
Number of extensions: 342842
Number of successful extensions: 696
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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