Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_B18
(760 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13244| Best HMM Match : HGTP_anticodon (HMM E-Value=1e-21) 201 4e-52
SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.) 70 2e-12
SB_26383| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.082
SB_8676| Best HMM Match : Peptidase_M18 (HMM E-Value=0) 32 0.44
SB_20226| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_40203| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_31911| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_3025| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0) 29 4.1
SB_10241| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30) 29 5.4
SB_10710| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_48398| Best HMM Match : BBE (HMM E-Value=4.1) 28 9.5
SB_40992| Best HMM Match : DUF1531 (HMM E-Value=5.7) 28 9.5
>SB_13244| Best HMM Match : HGTP_anticodon (HMM E-Value=1e-21)
Length = 518
Score = 201 bits (491), Expect = 4e-52
Identities = 112/199 (56%), Positives = 133/199 (66%), Gaps = 7/199 (3%)
Frame = +2
Query: 185 LKIQEQGDLVRK---LKAAKESNERVKEEVSKLLALKAQLVTEDAGP-QKFTLKTPKGTR 352
LK+QEQ D V+ + ++KEE SKL+ LK +L D G QKF LKTPKGTR
Sbjct: 28 LKLQEQTDEVKNKIIINFLCVDISQIKEETSKLVELKKEL--GDGGKTQKFVLKTPKGTR 85
Query: 353 DYNPQQMTIRNNVLDKIITVFRRHGAECIDTPVFELKDVLTGKYG-EDSKLIYDL--KDQ 523
DY P+QM +R + I+ F RHGA IDTPVFELK L G S +++ L K +
Sbjct: 86 DYMPKQMAVRQRAFEVIVGAFERHGAVQIDTPVFELK--LNGPAELVYSVILWSLIAKSK 143
Query: 524 GGEILSLRYDLTVPLARYLAMNKITTLKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAG 703
+SL L VP ARY+AMNKI +KRYHIAKVYRRDNPAMTRGRYREFYQCD DIAG
Sbjct: 144 SLVSISLTLRLQVPFARYVAMNKIDKIKRYHIAKVYRRDNPAMTRGRYREFYQCDIDIAG 203
Query: 704 VYDPMVPDAXCLKVVTEIL 760
YD M+PDA C+K+V EIL
Sbjct: 204 QYDAMIPDAECVKIVAEIL 222
>SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1822
Score = 70.1 bits (164), Expect = 2e-12
Identities = 49/144 (34%), Positives = 73/144 (50%), Gaps = 1/144 (0%)
Frame = +2
Query: 332 KTPKGTRDYNPQQMTIRNNVLDKIITVFRRHGAECIDTPVFELKDVLTGKYGEDSKLIYD 511
K+P R QQ+ V D + VF RHGA + TP+ + + ++
Sbjct: 1310 KSPVDARTILTQQL-----VHDTLKAVFTRHGALRMRTPLLTPRTKALDPHESAVAVV-- 1362
Query: 512 LKDQGGEILSLRYDLTVPLARYLAMNKITTLKRYHIAKVYRRDNPAMTRGRYREFYQCDF 691
D G IL+L YDL +P AR++A ++IT LKR+ I VYR + + +E Y+C F
Sbjct: 1363 --DHSGGILALPYDLRIPFARFIARSRITHLKRFDIGCVYR--DKRILGAHPKELYECAF 1418
Query: 692 D-IAGVYDPMVPDAXCLKVVTEIL 760
D I+ + VPDA + V EI+
Sbjct: 1419 DIISPTPEGNVPDAEVISAVAEII 1442
>SB_26383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1142
Score = 34.7 bits (76), Expect = 0.082
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 158 MADPQG-HLLLKIQEQGDLVRKLKAAKESNERVKEEVSKLLALKAQLVTEDAGPQKFTLK 334
M PQG + + ++ DLV KLKA KE +R+K E L A+ A + + P K
Sbjct: 679 MKPPQGKEFEIYLDDEPDLVEKLKAKKEQEDRLKAE---LAAIAAPIKVANGAPSVADNK 735
Query: 335 TPKGTRD 355
+ +D
Sbjct: 736 ASEDAKD 742
>SB_8676| Best HMM Match : Peptidase_M18 (HMM E-Value=0)
Length = 1161
Score = 32.3 bits (70), Expect = 0.44
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 158 MADPQG--HLLLKIQEQGDLVRKLKAAKESNERVKEEVSKLLALKAQLVT 301
+ADP L+ +I +QGD VR LK V EV+ LL LKA T
Sbjct: 422 LADPAAVEKLMGEITQQGDKVRTLKTGGADKGTVDAEVAVLLKLKADYKT 471
>SB_20226| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 613
Score = 31.5 bits (68), Expect = 0.77
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +2
Query: 176 HLLLKIQEQGDLVRKLKAAKESNERVKEEVSKLLALKAQL 295
+L ++EQGDLVRKLK K V+ + +L A K L
Sbjct: 12 NLRKSVKEQGDLVRKLKEDKAPENDVEIAIKELKARKKAL 51
>SB_40203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/33 (30%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = -1
Query: 379 YCHLLWVIVSCSLWCFKSKLLWAC-IFCYKLSL 284
Y + +W+I++C L+ ++ +L+ AC ++ Y++ L
Sbjct: 329 YLYEIWLILACMLYLYEIRLVLACMLYLYEIRL 361
Score = 29.5 bits (63), Expect = 3.1
Identities = 9/33 (27%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = -1
Query: 379 YCHLLWVIVSCSLWCFKSKLLWAC-IFCYKLSL 284
Y + +W++++C L+ ++ +L+ AC ++ Y++ L
Sbjct: 459 YLYEIWLVLACMLYLYEIRLVLACMLYLYEIRL 491
Score = 29.1 bits (62), Expect = 4.1
Identities = 9/35 (25%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = -1
Query: 385 ISYCHLLWVIVSCSLWCFKSKLLWAC-IFCYKLSL 284
+ Y + +W++++C L+ ++ +L+ AC ++ Y++ L
Sbjct: 236 MQYLYEIWLVLACMLYLYEIRLVLACMLYLYEIWL 270
Score = 29.1 bits (62), Expect = 4.1
Identities = 9/33 (27%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = -1
Query: 379 YCHLLWVIVSCSLWCFKSKLLWACI-FCYKLSL 284
Y + +W++++C L+ ++ +L+ AC+ + Y++ L
Sbjct: 589 YLYEIWLVLACMLYLYEIRLVLACMQYLYEIRL 621
Score = 28.7 bits (61), Expect = 5.4
Identities = 9/33 (27%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = -1
Query: 379 YCHLLWVIVSCSLWCFKSKLLWAC-IFCYKLSL 284
Y + +W++++C L+ ++ +L+ AC ++ Y++ L
Sbjct: 303 YLYEIWLVLACMLYLYEIRLVLACMLYLYEIWL 335
Score = 28.3 bits (60), Expect = 7.2
Identities = 9/35 (25%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = -1
Query: 385 ISYCHLLWVIVSCSLWCFKSKLLWAC-IFCYKLSL 284
+ Y + +W++++C L+ ++ +L+ AC ++ Y++ L
Sbjct: 1 MQYLYEIWLVLACMLYLYEIRLVPACMLYLYEIWL 35
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/41 (24%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = -1
Query: 403 YFIQYIISYCHLLWVIVSCSLWCFKSKLLWAC-IFCYKLSL 284
+ I + Y + +W++++C L+ ++ L+ AC ++ Y++ L
Sbjct: 282 WLILACMQYLYEIWLVLACMLYLYEIWLVLACMLYLYEIRL 322
Score = 28.3 bits (60), Expect = 7.2
Identities = 9/33 (27%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = -1
Query: 379 YCHLLWVIVSCSLWCFKSKLLWACI-FCYKLSL 284
Y + +W++++C L+ ++ +L+ AC+ + Y++ L
Sbjct: 550 YLYEIWLVLACMLYLYEIRLVLACMQYLYEIWL 582
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/35 (28%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = -1
Query: 385 ISYCHLLWVIVSCSLWCFKSKLLWAC-IFCYKLSL 284
+ Y + +W+I++C L+ ++ L+ AC ++ Y++ L
Sbjct: 574 MQYLYEIWLILACMLYLYEIWLVLACMLYLYEIRL 608
>SB_31911| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1312
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +2
Query: 188 KIQEQGDLVRKLKAAKESNERVKEEV-SKLLALKAQLVTEDAGPQKFTLKTPKGTRDYNP 364
K+QE V KLK AK+ E+++EE + AL + D +K L+T R+ N
Sbjct: 978 KMQED---VEKLKEAKKHREKMREEFRASFSALGRKASNMDDPSKKELLRTTMALREANK 1034
Query: 365 QQMTIRNNV 391
++ N+
Sbjct: 1035 ISQHLKKNI 1043
>SB_3025| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Frame = +2
Query: 356 YNPQQMTIRNNVLDKIITVFRRHGAECID----TPVFELKDVLTG--KYGEDSKLIYDLK 517
++PQ + NN DK +T G + + TP +DV + +S+ IY++K
Sbjct: 20 FDPQSVRNANNTNDKSVTFADVLGEQLVSVKHITPTSSYEDVKKAFIRRKINSRKIYEVK 79
Query: 518 DQGGEILSLRY 550
D+ I+ RY
Sbjct: 80 DENNNIIPGRY 90
>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
Length = 1452
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/38 (36%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Frame = -1
Query: 448 WCINTLSSVS-PKNC-NYFIQYIISYCHLLWVIVSCSL 341
+CI LS+ + KNC N ++ Y++ + + LW+++SC L
Sbjct: 184 YCIMPLSAKNFAKNCENEWVDYVL-HSYPLWLLLSCQL 220
>SB_10241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 155
Score = 29.1 bits (62), Expect = 4.1
Identities = 9/35 (25%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = -1
Query: 385 ISYCHLLWVIVSCSLWCFKSKLLWAC-IFCYKLSL 284
+ Y + +W++++C L+ ++ +L+ AC ++ Y++ L
Sbjct: 27 MQYLYEIWLVLACMLYLYEIRLVLACMLYLYEIWL 61
Score = 27.9 bits (59), Expect = 9.5
Identities = 7/27 (25%), Positives = 20/27 (74%)
Frame = -1
Query: 385 ISYCHLLWVIVSCSLWCFKSKLLWACI 305
+ Y + +W++++C L+ ++ +L+ AC+
Sbjct: 92 MQYLYEIWLVLACMLYLYEIRLVLACM 118
>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
Length = 3071
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 182 LLKIQ-EQGDLVRKLKAAKESNERVKEEVSKLLALKAQLVTEDAGPQKFTLKT 337
+L++Q QG L RK+ + +NER+K + LKA L+ +A LKT
Sbjct: 1272 ILELQYHQGQLERKITDLETANERLKNDKKD---LKADLIAANATITDLELKT 1321
>SB_10710| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 602 LKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGVYD 712
+KRY+ +Y D +T YR C FD A YD
Sbjct: 50 VKRYYFTVLYDADRLRLTPFSYRNKVFCRFDAAVHYD 86
>SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2671
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +2
Query: 407 TVFRRHGAECIDTPVFELKDVLT 475
TV R G E +DTPV+E +DVLT
Sbjct: 2227 TVARDAGKE-VDTPVYESRDVLT 2248
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +2
Query: 407 TVFRRHGAECIDTPVFELKDVLT 475
TV R G E +DTPV+E +DVLT
Sbjct: 2280 TVARDAGKE-VDTPVYESRDVLT 2301
>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1769
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 197 EQGDLVRKLKAAKESNERVKEEVSKLLALKAQLVTE 304
E +L+ +++ AKESNE E+VS L + L+ E
Sbjct: 238 EVANLLAEVQTAKESNEEESEKVSNELGRMSWLLVE 273
>SB_48398| Best HMM Match : BBE (HMM E-Value=4.1)
Length = 243
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 548 YDLTVPLARYLAMNKITTLKRYHIAKVYRRD 640
YDLT L +L +NK T L R K++RRD
Sbjct: 84 YDLTDHLPNFLIINKFTELPRRF--KLFRRD 112
>SB_40992| Best HMM Match : DUF1531 (HMM E-Value=5.7)
Length = 104
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +2
Query: 158 MADPQGHLLLKIQEQGDLVRKLKAAKESNERVKEEVSKLLALKAQLVT-EDAG 313
M DP G K +E+G+ ++LKA +E ++ +EE K KA+ + E AG
Sbjct: 36 MDDPSGE---KDEEKGEKKKQLKADEEDGKKEEEEGEKEKTEKAEEASGEPAG 85
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,746,793
Number of Sequences: 59808
Number of extensions: 425095
Number of successful extensions: 1040
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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