Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_B14
(779 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68216-1|CAA92459.1| 493|Caenorhabditis elegans Hypothetical pr... 157 6e-39
U50308-4|AAG24030.2| 483|Caenorhabditis elegans Amino acid tran... 153 1e-37
AF026214-3|AAB71312.2| 493|Caenorhabditis elegans Amino acid tr... 146 2e-35
U70850-4|AAB09125.3| 483|Caenorhabditis elegans Amino acid tran... 100 2e-21
AF040647-7|AAB94996.2| 506|Caenorhabditis elegans Amino acid tr... 90 1e-18
AF003144-7|AAV58876.1| 278|Caenorhabditis elegans Amino acid tr... 88 6e-18
AF003144-6|AAV58875.1| 521|Caenorhabditis elegans Amino acid tr... 88 6e-18
AF003144-5|AAV58874.1| 537|Caenorhabditis elegans Amino acid tr... 88 6e-18
U56963-7|AAQ01523.1| 526|Caenorhabditis elegans Amino acid tran... 85 4e-17
Z74042-3|CAA98529.2| 523|Caenorhabditis elegans Hypothetical pr... 81 1e-15
AL117201-2|CAI79268.1| 527|Caenorhabditis elegans Hypothetical ... 78 6e-15
AL117201-1|CAB55063.1| 541|Caenorhabditis elegans Hypothetical ... 78 6e-15
Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical pr... 31 0.92
Z73424-3|CAA97781.2| 1150|Caenorhabditis elegans Hypothetical pr... 31 1.2
U39740-4|AAO91692.1| 417|Caenorhabditis elegans C.elegans homeo... 30 1.6
U39740-3|AAA80426.2| 542|Caenorhabditis elegans C.elegans homeo... 30 1.6
U39740-2|AAM69077.1| 540|Caenorhabditis elegans C.elegans homeo... 30 1.6
U16367-1|AAA52203.1| 542|Caenorhabditis elegans CEH-18 protein. 30 1.6
AF025452-2|AAB70943.1| 585|Caenorhabditis elegans Hypothetical ... 30 1.6
AC024790-11|AAF60631.1| 199|Caenorhabditis elegans Hypothetical... 29 2.8
Z69884-8|CAA93752.2| 582|Caenorhabditis elegans Hypothetical pr... 29 3.7
AY090484-1|AAM11893.1| 582|Caenorhabditis elegans low-affinity ... 29 3.7
U80837-7|AAB37907.1| 760|Caenorhabditis elegans Hypothetical pr... 29 4.9
U80454-6|AAB37879.1| 786|Caenorhabditis elegans Hypothetical pr... 29 4.9
U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical pr... 29 4.9
AF016657-10|AAB93662.1| 217|Caenorhabditis elegans Hypothetical... 29 4.9
AC006608-11|AAF39761.1| 360|Caenorhabditis elegans Hypothetical... 28 6.5
Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical pr... 28 8.6
U41033-5|AAA82377.1| 675|Caenorhabditis elegans Hypothetical pr... 28 8.6
U41007-12|AAA82272.1| 485|Caenorhabditis elegans Nucleoside tri... 28 8.6
U39851-4|AAZ32803.1| 572|Caenorhabditis elegans Hypothetical pr... 28 8.6
U39851-3|AAZ32804.1| 563|Caenorhabditis elegans Hypothetical pr... 28 8.6
AF040642-9|AAB94950.1| 589|Caenorhabditis elegans Hypothetical ... 28 8.6
>Z68216-1|CAA92459.1| 493|Caenorhabditis elegans Hypothetical
protein F27C8.1 protein.
Length = 493
Score = 157 bits (382), Expect = 6e-39
Identities = 77/203 (37%), Positives = 123/203 (60%)
Frame = +1
Query: 163 DGNSNPGDKLEGSDAAPDDPVHLKRRVGLFSGVALIVGTMIGSGIFVSPSGLLARTGSVG 342
+G+ P ++ EG L++ + LF+GV++IVG +IGSGIFVSP+G+ + GSVG
Sbjct: 12 EGDEAPQNETEGKGKG------LEKSLTLFNGVSMIVGCIIGSGIFVSPTGVQEQAGSVG 65
Query: 343 ISFIIWMACXXXXXXXXXXXXXXXTMNTSSGAEYAYFMDAFGGPPAFLFSWVSTLVLKPS 522
+S I+W+ T+ SG +YAY M+AFG AF+ W+ +V++P
Sbjct: 66 LSLIVWLISGIFTAIGAYCYAELGTLIKKSGGDYAYIMEAFGPFVAFIRLWIEAIVVRPC 125
Query: 523 QMAIICLSFAKYAVEPFVAECEPPDSLVKLVAVISIVMILXVNCYSVNLATNVQNIFTAA 702
+ I+ L+FA Y + PF +C PPD + +L+A++ IV++ +NC SV LAT VQ+ FT A
Sbjct: 126 TVTIVALTFAIYGLRPFFPDCAPPDVVAELLAILLIVLMTAINCISVRLATIVQDWFTIA 185
Query: 703 KLVAIAIIVCGGAYKLILXNTRH 771
K+VA+ +I+ G L +++
Sbjct: 186 KVVALCLIILTGLGLLFFGESQY 208
>U50308-4|AAG24030.2| 483|Caenorhabditis elegans Amino acid
transporter protein 2 protein.
Length = 483
Score = 153 bits (372), Expect = 1e-37
Identities = 72/184 (39%), Positives = 110/184 (59%)
Frame = +1
Query: 223 VHLKRRVGLFSGVALIVGTMIGSGIFVSPSGLLARTGSVGISFIIWMACXXXXXXXXXXX 402
+ LK R+ LF+G +I+G +IGSGIFVSP G+L GS G+S +IW+
Sbjct: 13 IKLKPRISLFNGCTIIIGVIIGSGIFVSPKGVLLEAGSAGMSLLIWLLSGVFAMIGAVCY 72
Query: 403 XXXXTMNTSSGAEYAYFMDAFGGPPAFLFSWVSTLVLKPSQMAIICLSFAKYAVEPFVAE 582
T+ SG +YAY +AFG P+FLF WV+ +++ P+ +AII ++ A YA++PF +
Sbjct: 73 SELGTLIPKSGGDYAYIYEAFGPLPSFLFLWVALVIINPTSLAIIAITCATYALQPFYS- 131
Query: 583 CEPPDSLVKLVAVISIVMILXVNCYSVNLATNVQNIFTAAKLVAIAIIVCGGAYKLILXN 762
C PD +V L A I ++ +NC+ V +AT + FT KL+A+ +I+ G Y L L +
Sbjct: 132 CPVPDVVVNLFAGCIIAVLTFINCWDVRMATRTNDFFTITKLIALTLIITCGGYWLSLGH 191
Query: 763 TRHL 774
+L
Sbjct: 192 IDNL 195
>AF026214-3|AAB71312.2| 493|Caenorhabditis elegans Amino acid
transporter protein 3 protein.
Length = 493
Score = 146 bits (353), Expect = 2e-35
Identities = 66/175 (37%), Positives = 108/175 (61%)
Frame = +1
Query: 229 LKRRVGLFSGVALIVGTMIGSGIFVSPSGLLARTGSVGISFIIWMACXXXXXXXXXXXXX 408
L++ + LF+GV++IVG +IGSGIF+SP+G+ A+ GSVG+S I+W+
Sbjct: 28 LEKTMTLFNGVSIIVGCIIGSGIFISPTGIQAQAGSVGLSLIVWVLSGLFAGIGAFCYAE 87
Query: 409 XXTMNTSSGAEYAYFMDAFGGPPAFLFSWVSTLVLKPSQMAIICLSFAKYAVEPFVAECE 588
T+ SG +YAY M+AFG AFL W+ ++V++P I+ L+FA Y ++PF +C+
Sbjct: 88 LGTLIRKSGGDYAYIMEAFGPFLAFLRLWIESIVVRPCTATIVALTFAIYMLKPFYPDCD 147
Query: 589 PPDSLVKLVAVISIVMILXVNCYSVNLATNVQNIFTAAKLVAIAIIVCGGAYKLI 753
P +L+A + +V++ VNC SV A+ VQ+ F K A+ +I+ G + ++
Sbjct: 148 SPPLSTELIAALLLVLLTAVNCISVKWASKVQDFFFVTKTAALVLIIFTGLWNMV 202
>U70850-4|AAB09125.3| 483|Caenorhabditis elegans Amino acid
transporter protein 8 protein.
Length = 483
Score = 99.5 bits (237), Expect = 2e-21
Identities = 62/178 (34%), Positives = 92/178 (51%), Gaps = 6/178 (3%)
Frame = +1
Query: 238 RVGLFSGVALIVGTMIGSGIFVSPSGLLARTGSVGISFIIWMACXXXXXXXXXXXXXXXT 417
++GL + IVG++IGSGIF++P G++ GSVG+S IIW+ C T
Sbjct: 8 KIGLIGATSYIVGSIIGSGIFIAPKGIVEHAGSVGLSLIIWVFCALLNMITAINYIELGT 67
Query: 418 MNTSSGAEYAYFMDAFGGPP-AFLFSWVSTLVLKPSQMAIICLSFAKY---AVEPFVA-E 582
SGA+ AY +D G P AF W+S L+ S A++ L+F KY A+EP V
Sbjct: 68 SIPESGADLAY-IDYMGWTPIAFSLLWLSLLIQSSSSAAVLYLTFGKYLVQALEPIVCFT 126
Query: 583 CEPPDSLVKLVAVISIVMILXVNCYSVN-LATNVQNIFTAAKLVAIAIIVCGGAYKLI 753
D+ KL ++ + N +S+N A VQ I +K+ A II+ G + +I
Sbjct: 127 SSGADNCAKLFGFGLLLFLTLTNMFSLNKFAARVQIISMCSKIFATLIIIGIGFFFII 184
>AF040647-7|AAB94996.2| 506|Caenorhabditis elegans Amino acid
transporter protein 7 protein.
Length = 506
Score = 90.2 bits (214), Expect = 1e-18
Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 5/179 (2%)
Frame = +1
Query: 232 KRRVGLFSGVALIVGTMIGSGIFVSPSGLLARTGSVGISFIIWMACXXXXXXXXXXXXXX 411
K +GL + ++ VG ++GSGIF+SP+ +L GSVG+S +W C
Sbjct: 11 KHTIGLITAISYTVGDIVGSGIFISPTSILNHAGSVGLSLCLWALCACISLFGALSYVEL 70
Query: 412 XTMNTSSGAEYAYFMDAFGGPPAFLFSWVSTLVLKPSQMAIICLSFAKYAVEPFVAECEP 591
T SG ++AY P A F WVST + P+ +AI +SF +Y V +
Sbjct: 71 GTSIRKSGCDFAYLSHFGWRPLASSFMWVSTCLSYPAVLAIQAISFGEYIVTGLDSWITI 130
Query: 592 PDS----LVKLVAVISIVMILXVNCYSV-NLATNVQNIFTAAKLVAIAIIVCGGAYKLI 753
++ +LV + ++ +N +S+ +A Q + TA KL+ +II+ G Y +I
Sbjct: 131 DENWRFMTYRLVGFSMLWPLMLLNFFSLKKVAGAFQIVATAIKLIVASIIIITGLYHII 189
>AF003144-7|AAV58876.1| 278|Caenorhabditis elegans Amino acid
transporter protein5, isoform c protein.
Length = 278
Score = 88.2 bits (209), Expect = 6e-18
Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 5/174 (2%)
Frame = +1
Query: 238 RVGLFSGVALIVGTMIGSGIFVSPSGLLARTGSVGISFIIWMACXXXXXXXXXXXXXXXT 417
++G + ++G +IGSGIF++P+ +L S+G+S +IW+ C T
Sbjct: 6 KMGFLGATSYVIGNIIGSGIFITPASILRNVDSIGLSLLIWVLCAVIAILGAICYIELGT 65
Query: 418 MNTSSGAEYAYFMDAFGGPPAFLFSWVSTLVLKPSQMAIICLSFAKYAVEPFVAECEPPD 597
+G ++AY AF F WVS L+ P+ +AI +F +Y +E E D
Sbjct: 66 SIREAGCDFAYICYVKWYSIAFAFMWVSVLMTYPATIAICAETFGQYLIEGLKQYYEIDD 125
Query: 598 SLV----KLVAVISIVMILXVNCYSVN-LATNVQNIFTAAKLVAIAIIVCGGAY 744
+LV KL A + ++ +N + ++ A Q + T AKL + +I+ G Y
Sbjct: 126 ALVPTCQKLFAYSLLFLVTWMNFFELSKFAARFQILATIAKLFSCMLIIGTGFY 179
>AF003144-6|AAV58875.1| 521|Caenorhabditis elegans Amino acid
transporter protein5, isoform b protein.
Length = 521
Score = 88.2 bits (209), Expect = 6e-18
Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 5/174 (2%)
Frame = +1
Query: 238 RVGLFSGVALIVGTMIGSGIFVSPSGLLARTGSVGISFIIWMACXXXXXXXXXXXXXXXT 417
++G + ++G +IGSGIF++P+ +L S+G+S +IW+ C T
Sbjct: 6 KMGFLGATSYVIGNIIGSGIFITPASILRNVDSIGLSLLIWVLCAVIAILGAICYIELGT 65
Query: 418 MNTSSGAEYAYFMDAFGGPPAFLFSWVSTLVLKPSQMAIICLSFAKYAVEPFVAECEPPD 597
+G ++AY AF F WVS L+ P+ +AI +F +Y +E E D
Sbjct: 66 SIREAGCDFAYICYVKWYSIAFAFMWVSVLMTYPATIAICAETFGQYLIEGLKQYYEIDD 125
Query: 598 SLV----KLVAVISIVMILXVNCYSVN-LATNVQNIFTAAKLVAIAIIVCGGAY 744
+LV KL A + ++ +N + ++ A Q + T AKL + +I+ G Y
Sbjct: 126 ALVPTCQKLFAYSLLFLVTWMNFFELSKFAARFQILATIAKLFSCMLIIGTGFY 179
>AF003144-5|AAV58874.1| 537|Caenorhabditis elegans Amino acid
transporter protein5, isoform a protein.
Length = 537
Score = 88.2 bits (209), Expect = 6e-18
Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 5/174 (2%)
Frame = +1
Query: 238 RVGLFSGVALIVGTMIGSGIFVSPSGLLARTGSVGISFIIWMACXXXXXXXXXXXXXXXT 417
++G + ++G +IGSGIF++P+ +L S+G+S +IW+ C T
Sbjct: 6 KMGFLGATSYVIGNIIGSGIFITPASILRNVDSIGLSLLIWVLCAVIAILGAICYIELGT 65
Query: 418 MNTSSGAEYAYFMDAFGGPPAFLFSWVSTLVLKPSQMAIICLSFAKYAVEPFVAECEPPD 597
+G ++AY AF F WVS L+ P+ +AI +F +Y +E E D
Sbjct: 66 SIREAGCDFAYICYVKWYSIAFAFMWVSVLMTYPATIAICAETFGQYLIEGLKQYYEIDD 125
Query: 598 SLV----KLVAVISIVMILXVNCYSVN-LATNVQNIFTAAKLVAIAIIVCGGAY 744
+LV KL A + ++ +N + ++ A Q + T AKL + +I+ G Y
Sbjct: 126 ALVPTCQKLFAYSLLFLVTWMNFFELSKFAARFQILATIAKLFSCMLIIGTGFY 179
>U56963-7|AAQ01523.1| 526|Caenorhabditis elegans Amino acid
transporter protein 4 protein.
Length = 526
Score = 85.4 bits (202), Expect = 4e-17
Identities = 50/188 (26%), Positives = 98/188 (52%), Gaps = 6/188 (3%)
Frame = +1
Query: 232 KRRVGLFSGVALIVGTMIGSGIFVSPSGLLARTGSVGISFIIWMACXXXXXXXXXXXXXX 411
+ ++GL+S ++ ++ +IG+GIF++P +L T S G++ ++W+ C
Sbjct: 17 RHQMGLWSCMSYVIANIIGAGIFITPGPILQYTFSNGLALLVWIGCGLISLIGGICYIEL 76
Query: 412 XTMNTSSGAEYAYFMDAFGGPPAFLFSWVSTLVLKPSQMAIICLSFAKYAV---EPFVAE 582
T G ++AY + AF F WV ++ P+ A+ L+F +Y V P
Sbjct: 77 GTSIHDPGCDFAYTVYVGWEGIAFSFMWVGVIMSFPASAAVQALTFGQYIVAGMAPIWPL 136
Query: 583 CEPPDSLVKLVAVISIVMILXV-NCYSVN-LATNVQNIFTAAKLVAIAIIVCGGAYKLIL 756
P D +++ +++++L + N Y+++ A+ Q + T AK++++AII+ G Y LI
Sbjct: 137 EHPWDGIIEKGLGFALIIVLTILNLYAIDKYASKFQIVVTIAKMLSLAIIIVTGFYYLIF 196
Query: 757 -XNTRHLQ 777
T +L+
Sbjct: 197 KGQTEYLE 204
>Z74042-3|CAA98529.2| 523|Caenorhabditis elegans Hypothetical
protein T11F9.4 protein.
Length = 523
Score = 80.6 bits (190), Expect = 1e-15
Identities = 50/188 (26%), Positives = 88/188 (46%), Gaps = 3/188 (1%)
Frame = +1
Query: 199 SDAAPDDPVHLKRRVGLFSGVALIVGTMIGSGIFVSPSGLLARTGSVGISFIIWMACXXX 378
S + PDD +++GL ++ IVG ++GSGIF++P+ ++ SVG+S IW+
Sbjct: 8 SASMPDDS--RSQKMGLLGAISYIVGNIVGSGIFITPTSIIENVNSVGLSLAIWILAAFI 65
Query: 379 XXXXXXXXXXXXTMNTSSGAEYAYFMDAFGGPPAFLFSWVSTLVLKPSQMAIICLSFAKY 558
T SG ++AY P AF F + + P+ +A+ +FA+Y
Sbjct: 66 SMLGSFCYVELGTSIRLSGGDFAYLCFMKWYPVAFAFMCIGCTINYPATLAVQAQTFAEY 125
Query: 559 AVEPFVAECEPPDSL--VKLVAVISIVMILXVNCYSVNLATNVQNIFTA-AKLVAIAIIV 729
E + KL+ I++++ +N +S+ +I + AK+ A +I+
Sbjct: 126 VFRGAGVELDETSEFWAKKLLGFSLIILLMFMNFFSLKTFVQRFSILASLAKIAATLLII 185
Query: 730 CGGAYKLI 753
G Y LI
Sbjct: 186 ITGFYYLI 193
>AL117201-2|CAI79268.1| 527|Caenorhabditis elegans Hypothetical
protein Y53H1C.1b protein.
Length = 527
Score = 78.2 bits (184), Expect = 6e-15
Identities = 50/193 (25%), Positives = 96/193 (49%), Gaps = 6/193 (3%)
Frame = +1
Query: 217 DPVHLKRRVGLFSGVALIVGTMIGSGIFVSPSGLLARTGSVGISFIIWMACXXXXXXXXX 396
D + ++GL+S ++ ++ +IG+GIF++P +L + G++ ++W+ C
Sbjct: 12 DVAATRHQMGLWSCMSYVIANIIGAGIFITPGTVLKLALTNGMALVVWLGCGLISLIGGI 71
Query: 397 XXXXXXTMNTSSGAEYAYFMDAFGGPPAFLFSWVSTLVLKPSQMAIICLSFAKYAV---E 567
T G ++AY + AF F WV ++ P+ A+ +F +Y V
Sbjct: 72 CYIELGTSIRDPGCDFAYNVYVGWEGIAFSFMWVGVIMSFPASAAVQAQTFGQYIVAGLS 131
Query: 568 PFVAECEPPDSLVKLVAVISIVMILXV-NCYSVN-LATNVQNIFTAAKLVAIAIIVCGGA 741
P P D +++ ++++IL V N Y+++ A+ Q T AKL+++AII+ G
Sbjct: 132 PIWHLGSPYDVILERGLGFALIIILTVLNLYAIDKYASKFQIFVTIAKLLSLAIIIVTGF 191
Query: 742 YKLIL-XNTRHLQ 777
+ LI+ T H +
Sbjct: 192 WYLIVKGETEHFK 204
>AL117201-1|CAB55063.1| 541|Caenorhabditis elegans Hypothetical
protein Y53H1C.1a protein.
Length = 541
Score = 78.2 bits (184), Expect = 6e-15
Identities = 50/193 (25%), Positives = 96/193 (49%), Gaps = 6/193 (3%)
Frame = +1
Query: 217 DPVHLKRRVGLFSGVALIVGTMIGSGIFVSPSGLLARTGSVGISFIIWMACXXXXXXXXX 396
D + ++GL+S ++ ++ +IG+GIF++P +L + G++ ++W+ C
Sbjct: 12 DVAATRHQMGLWSCMSYVIANIIGAGIFITPGTVLKLALTNGMALVVWLGCGLISLIGGI 71
Query: 397 XXXXXXTMNTSSGAEYAYFMDAFGGPPAFLFSWVSTLVLKPSQMAIICLSFAKYAV---E 567
T G ++AY + AF F WV ++ P+ A+ +F +Y V
Sbjct: 72 CYIELGTSIRDPGCDFAYNVYVGWEGIAFSFMWVGVIMSFPASAAVQAQTFGQYIVAGLS 131
Query: 568 PFVAECEPPDSLVKLVAVISIVMILXV-NCYSVN-LATNVQNIFTAAKLVAIAIIVCGGA 741
P P D +++ ++++IL V N Y+++ A+ Q T AKL+++AII+ G
Sbjct: 132 PIWHLGSPYDVILERGLGFALIIILTVLNLYAIDKYASKFQIFVTIAKLLSLAIIIVTGF 191
Query: 742 YKLIL-XNTRHLQ 777
+ LI+ T H +
Sbjct: 192 WYLIVKGETEHFK 204
>Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical
protein C27B7.5 protein.
Length = 386
Score = 31.1 bits (67), Expect = 0.92
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 150 GSVRRWQLKPRRQAGGVGRSSGRPCSPQETGGTLQWGGSNCRH 278
GS RR + ++ G+G SS RP S + TG + G +C H
Sbjct: 130 GSPRRGSFRSSPRSDGMGSSSKRPRSGRRTGRRGRGGPGHCFH 172
>Z73424-3|CAA97781.2| 1150|Caenorhabditis elegans Hypothetical protein
C44B9.4 protein.
Length = 1150
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +3
Query: 129 RCRRRHDGSVRRWQLK--PRRQAGGVGRSSGRPCSPQETGGTLQWGGSNCRH 278
R R+ D ++ + Q K P+ G GR GRP + + G++ GG + RH
Sbjct: 848 RNRKEGDTTIPKQQRKRNPQPVGRGRGRGGGRPRGSRSSRGSMDDGGGSRRH 899
>U39740-4|AAO91692.1| 417|Caenorhabditis elegans C.elegans homeobox
protein 18,isoform c protein.
Length = 417
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -1
Query: 410 NSAYASAPSNESRPHAIQMMKLMPTEPVRAKSPEGDTNIPDPIIVPTIRAT 258
NS S+P P +Q + PT+P + +P+ N P P++ T++A+
Sbjct: 235 NSGLLSSPLIAPSPTLLQSLMNTPTQPTASLTPKKAENRP-PVVSQTLKAS 284
>U39740-3|AAA80426.2| 542|Caenorhabditis elegans C.elegans homeobox
protein 18,isoform a protein.
Length = 542
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -1
Query: 410 NSAYASAPSNESRPHAIQMMKLMPTEPVRAKSPEGDTNIPDPIIVPTIRAT 258
NS S+P P +Q + PT+P + +P+ N P P++ T++A+
Sbjct: 222 NSGLLSSPLIAPSPTLLQSLMNTPTQPTASLTPKKAENRP-PVVSQTLKAS 271
>U39740-2|AAM69077.1| 540|Caenorhabditis elegans C.elegans homeobox
protein 18,isoform b protein.
Length = 540
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -1
Query: 410 NSAYASAPSNESRPHAIQMMKLMPTEPVRAKSPEGDTNIPDPIIVPTIRAT 258
NS S+P P +Q + PT+P + +P+ N P P++ T++A+
Sbjct: 220 NSGLLSSPLIAPSPTLLQSLMNTPTQPTASLTPKKAENRP-PVVSQTLKAS 269
>U16367-1|AAA52203.1| 542|Caenorhabditis elegans CEH-18 protein.
Length = 542
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -1
Query: 410 NSAYASAPSNESRPHAIQMMKLMPTEPVRAKSPEGDTNIPDPIIVPTIRAT 258
NS S+P P +Q + PT+P + +P+ N P P++ T++A+
Sbjct: 222 NSGLLSSPLIAPSPTLLQSLMNTPTQPTASLTPKKAENRP-PVVSQTLKAS 271
>AF025452-2|AAB70943.1| 585|Caenorhabditis elegans Hypothetical
protein B0454.6 protein.
Length = 585
Score = 30.3 bits (65), Expect = 1.6
Identities = 37/185 (20%), Positives = 65/185 (35%), Gaps = 14/185 (7%)
Frame = +1
Query: 226 HLKRRVGLFSGVALIVGTMIGSGIFVSPSGLLARTGSVGISFIIWMACXXXXXXXXXXXX 405
+L+R +GL L +G M+G+GI+V ++ I F +A
Sbjct: 24 NLRRCLGLMDITFLALGQMMGAGIYVLTGTVVRNQAGPSIIFSFALA-GIAALLSAFSYA 82
Query: 406 XXXTMNTSSGAEYAYFMDAFGGPPAFLFSWVSTLVLKPSQMAI----------ICLSFAK 555
+G+ Y Y FG AF+ W L A+ + ++ K
Sbjct: 83 EFGARFPRAGSAYTYTYIGFGELWAFIVGWTIPLEYMIGNAAVARSWSAYFDNMLDNYIK 142
Query: 556 YAVEPFVAECEPPDSLVKLVA-VISIVMILXVNC---YSVNLATNVQNIFTAAKLVAIAI 723
+ E P ++S ++I C ++ NV + F +V I I
Sbjct: 143 NTTIGALGELSEPGGFFSTYPDILSFLLICLCACVIAVGPKVSANVNSSFVVLNIVVIFI 202
Query: 724 IVCGG 738
++ G
Sbjct: 203 VIVSG 207
>AC024790-11|AAF60631.1| 199|Caenorhabditis elegans Hypothetical
protein Y47D7A.12 protein.
Length = 199
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Frame = -1
Query: 434 PDDVFIVPNSAYASAPSNESRPHAIQMMKLMPTEPVRAKSP-EGDTNIPDPIIVPTIRAT 258
P D ++VP +Y +AP + H+ T P P + D + + A+
Sbjct: 32 PSDSYVVPKQSYPTAPGAYATKHSFPQNSAPVTAPPLPPPPAPSGYSSDDASVTSNVAAS 91
Query: 257 PLKSPT 240
P PT
Sbjct: 92 PPAPPT 97
>Z69884-8|CAA93752.2| 582|Caenorhabditis elegans Hypothetical
protein F31F6.6 protein.
Length = 582
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +1
Query: 433 GAEYAYFMDAFGGPPAFLFSWVS----TLVLKPSQMAIICLSFAKYAVEPFVAECE 588
G+E A M F G FL W+S T ++ P ++I + + +E VA CE
Sbjct: 124 GSEPARVMAGFMGVTGFLSMWISNTATTALMVPILQSVITELVSNHRMEDLVALCE 179
>AY090484-1|AAM11893.1| 582|Caenorhabditis elegans low-affinity
dicarboxylate transporterINDY1 protein.
Length = 582
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +1
Query: 433 GAEYAYFMDAFGGPPAFLFSWVS----TLVLKPSQMAIICLSFAKYAVEPFVAECE 588
G+E A M F G FL W+S T ++ P ++I + + +E VA CE
Sbjct: 124 GSEPARVMAGFMGVTGFLSMWISNTATTALMVPILQSVITELVSNHRMEDLVALCE 179
>U80837-7|AAB37907.1| 760|Caenorhabditis elegans Hypothetical
protein F07E5.8 protein.
Length = 760
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 600 FGQIGCGHFDCDDLXSELLQCQLGN 674
F + GH D DDL +ELL + GN
Sbjct: 29 FNNLTTGHVDEDDLIAELLNIETGN 53
>U80454-6|AAB37879.1| 786|Caenorhabditis elegans Hypothetical
protein T16A1.2 protein.
Length = 786
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 600 FGQIGCGHFDCDDLXSELLQCQLGN 674
F + GH D DDL +ELL + GN
Sbjct: 55 FNNLTSGHVDEDDLIAELLNIETGN 79
>U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical
protein F31E3.4 protein.
Length = 1131
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +3
Query: 330 RLSGHKLHHLDGMW--PALVAWSACVCGIRDNEYII 431
RL H+ H+DG W PAL+A+ ++ +E II
Sbjct: 840 RLHDHEARHIDGRWKLPALLAYKKKNFDVKTSEDII 875
>AF016657-10|AAB93662.1| 217|Caenorhabditis elegans Hypothetical
protein C16C4.9 protein.
Length = 217
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -1
Query: 641 KIITIEMTATNLTKLSGGSHSATKGSTAYLAKLRQIMAICDGF 513
KI + T N++ + G H TK + R ++ CDGF
Sbjct: 88 KIFLLHHTVENVSSIEEGGHYYTKTEKRFNIPWRLLIQRCDGF 130
>AC006608-11|AAF39761.1| 360|Caenorhabditis elegans Hypothetical
protein C15F1.1 protein.
Length = 360
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 598 SLVKLVAVISIVMILXVNCY--SVNLATNVQNIFTAAKLVAIAIIVCG 735
S+ + +I + L +NC+ S+N TNVQNI L+ I G
Sbjct: 4 SISLFLQLIHCIPHLNINCFYCSINQITNVQNILNIQLLIVHLTIFTG 51
>Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical protein
F16B12.6 protein.
Length = 1392
Score = 27.9 bits (59), Expect = 8.6
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Frame = +2
Query: 2 AAILHTQHGASSNASQ*TADRVMHATGAHAKAD-----WFGA-GAQPAAMPKTARRERST 163
A I+H +HG + + + + +G+HA D W GA GA P+ KT E
Sbjct: 1165 AKIIHQEHGIHISPNMLFSLKRRELSGSHADNDTFVTEWTGADGAGPSTSAKTETVEEVV 1224
Query: 164 MATQTQET 187
+ Q +T
Sbjct: 1225 IEEQIPKT 1232
>U41033-5|AAA82377.1| 675|Caenorhabditis elegans Hypothetical
protein K09E3.1 protein.
Length = 675
Score = 27.9 bits (59), Expect = 8.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 428 HLALNTPISWTPSGAHPHSSFH 493
H A+N+ + + +GAH +S+FH
Sbjct: 377 HQAINSQVRYPSAGAHDYSAFH 398
>U41007-12|AAA82272.1| 485|Caenorhabditis elegans Nucleoside
triphosphatase protein 1 protein.
Length = 485
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 288 IRNIRIALWAFGAYRLSGHKLHHLDGMWPALVAWSA 395
I+N++ L + A R+S + +DG W + +W A
Sbjct: 126 IKNLQNGLKSVTALRVSDSNIRIIDGAWEGIYSWIA 161
>U39851-4|AAZ32803.1| 572|Caenorhabditis elegans Hypothetical
protein C23G10.7b protein.
Length = 572
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 136 RHRSWLSTRAKPIRLRVCSRCMHYPVGC 53
+ +SW +A+ IR C +H+P GC
Sbjct: 534 KRQSWKPKKAETIRKAPCWMSLHHPDGC 561
>U39851-3|AAZ32804.1| 563|Caenorhabditis elegans Hypothetical
protein C23G10.7c protein.
Length = 563
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 136 RHRSWLSTRAKPIRLRVCSRCMHYPVGC 53
+ +SW +A+ IR C +H+P GC
Sbjct: 525 KRQSWKPKKAETIRKAPCWMSLHHPDGC 552
>AF040642-9|AAB94950.1| 589|Caenorhabditis elegans Hypothetical
protein C50D2.2 protein.
Length = 589
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 229 LKRRVGLFSGVALIVGTMIGSGIFVSPSGLLARTG--SVGISFII 357
L+R + F L VG MIG+GI+V ++ T S+ +SF++
Sbjct: 25 LRRCLSTFDITLLGVGHMIGAGIYVLTGSVVRNTAGPSIILSFLL 69
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,419,731
Number of Sequences: 27780
Number of extensions: 446392
Number of successful extensions: 1310
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1301
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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