Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_B13
(619 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 37 0.003
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 33 0.025
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 30 0.23
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.23
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 30 0.31
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 29 0.71
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 28 0.94
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 0.94
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 28 1.2
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom... 28 1.2
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 28 1.2
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 28 1.2
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 28 1.2
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||... 27 1.6
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 27 2.2
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 27 2.2
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 27 2.9
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 27 2.9
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 27 2.9
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 26 3.8
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 26 3.8
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 26 5.0
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 26 5.0
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom... 26 5.0
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 25 6.6
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 25 6.6
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 25 6.6
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 25 6.6
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 25 6.6
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom... 25 6.6
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 8.8
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 25 8.8
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 25 8.8
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/52 (36%), Positives = 37/52 (71%), Gaps = 3/52 (5%)
Frame = +2
Query: 323 LEAIQKDKEQKMQQE--LKREEEERSR-IELQNRVMLEKQKQQSNKITEEQQ 469
LEA ++++ +K ++E LKRE+E++ + +E Q R +KQK++ K+ ++QQ
Sbjct: 629 LEAKRQEEARKKREEQRLKREQEKKQQELERQKREEKQKQKEREKKLKKQQQ 680
Score = 32.7 bits (71), Expect = 0.044
Identities = 19/66 (28%), Positives = 44/66 (66%), Gaps = 6/66 (9%)
Frame = +2
Query: 335 QKDKEQKM---QQELKREE---EERSRIELQNRVMLEKQKQQSNKITEEQQVQRIKDALN 496
QK++E+K+ QQE RE+ E+R R E + R++ E+++++ K+ +E++ +R ++ L
Sbjct: 668 QKEREKKLKKQQQEADREKMAREQRLREEEEKRILEERKRRE--KLDKEEEERRRRELLE 725
Query: 497 AQTYDQ 514
++ ++
Sbjct: 726 KESEEK 731
Score = 29.9 bits (64), Expect = 0.31
Identities = 13/32 (40%), Positives = 23/32 (71%)
Frame = +2
Query: 344 KEQKMQQELKREEEERSRIELQNRVMLEKQKQ 439
+E+K +++L +EEEER R EL + EK+++
Sbjct: 703 EERKRREKLDKEEEERRRRELLEKESEEKERR 734
Score = 29.5 bits (63), Expect = 0.41
Identities = 16/80 (20%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Frame = +2
Query: 308 LFKPYLEAIQKDKEQKMQQELKRE---EEERSRIELQNRVMLEKQKQQSNKITEEQQVQR 478
+ + Y E + + ++ K+ +E++ E ++ER +++ + +K+Q EE++ +R
Sbjct: 556 VLQAYREKVAQQRQAKLLEEIEEENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQRR 615
Query: 479 IKDALNAQTYDQFLQYAQQQ 538
+ L Q + L+ +Q+
Sbjct: 616 EAERLAEQAAQKALEAKRQE 635
Score = 26.6 bits (56), Expect = 2.9
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +2
Query: 347 EQKMQQ--ELKREEEERSRIELQNRVMLEKQKQQSNKITEEQQVQRIKD 487
EQ Q+ E KR+EE R + E Q +++KQQ + + ++ Q+ K+
Sbjct: 622 EQAAQKALEAKRQEEARKKREEQRLKREQEKKQQELERQKREEKQKQKE 670
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 33.5 bits (73), Expect = 0.025
Identities = 17/79 (21%), Positives = 43/79 (54%)
Frame = +2
Query: 329 AIQKDKEQKMQQELKREEEERSRIELQNRVMLEKQKQQSNKITEEQQVQRIKDALNAQTY 508
AIQ+ ++K + E KR+ EE++R+E + E + +Q+ + EE+ + ++ +
Sbjct: 532 AIQQRIQEKAEAEAKRKAEEKARLEAEENAKREAE-EQAKREAEEKAKREAEEKAKREAE 590
Query: 509 DQFLQYAQQQFPGNFDQQA 565
++ + A++ +++A
Sbjct: 591 EKAKREAEENAKREAEEKA 609
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/80 (18%), Positives = 43/80 (53%)
Frame = +2
Query: 326 EAIQKDKEQKMQQELKREEEERSRIELQNRVMLEKQKQQSNKITEEQQVQRIKDALNAQT 505
EA +K K + +++ KRE EE+++ E + E + +++ + EE+ + ++ +
Sbjct: 572 EAEEKAKREA-EEKAKREAEEKAKREAEENAKREAE-EKAKREAEEKAKREAEEKAKREA 629
Query: 506 YDQFLQYAQQQFPGNFDQQA 565
++ + A+++ +++A
Sbjct: 630 EEKAKREAEEKAKREAEEKA 649
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/80 (18%), Positives = 42/80 (52%)
Frame = +2
Query: 326 EAIQKDKEQKMQQELKREEEERSRIELQNRVMLEKQKQQSNKITEEQQVQRIKDALNAQT 505
EA +K K + ++ KRE EE+++ E + + E + +++ + EE+ + ++ +
Sbjct: 588 EAEEKAKREA-EENAKREAEEKAKREAEEKAKREAE-EKAKREAEEKAKREAEEKAKREA 645
Query: 506 YDQFLQYAQQQFPGNFDQQA 565
++ + A+++ ++ A
Sbjct: 646 EEKAKREAEEKAKREAEENA 665
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/77 (14%), Positives = 43/77 (55%)
Frame = +2
Query: 335 QKDKEQKMQQELKREEEERSRIELQNRVMLEKQKQQSNKITEEQQVQRIKDALNAQTYDQ 514
+++ +++ +++ KRE EE+++ E + + E + +++ + EE+ + ++ + ++
Sbjct: 598 EENAKREAEEKAKREAEEKAKREAEEKAKREAE-EKAKREAEEKAKREAEEKAKREAEEK 656
Query: 515 FLQYAQQQFPGNFDQQA 565
+ A++ +++A
Sbjct: 657 AKREAEENAKREAEEKA 673
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/55 (23%), Positives = 31/55 (56%)
Frame = +2
Query: 326 EAIQKDKEQKMQQELKREEEERSRIELQNRVMLEKQKQQSNKITEEQQVQRIKDA 490
EA +K K + +++ KRE EE+++ E + + E ++ + E+ + + ++A
Sbjct: 628 EAEEKAKREA-EEKAKREAEEKAKREAEEKAKREAEENAKREAEEKAKREAEENA 681
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 30.3 bits (65), Expect = 0.23
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Frame = +2
Query: 275 GFVHALDRLCPLF--KPYLEAIQKDKEQKMQQELKREEEERSRIELQNRV-MLEKQKQQS 445
G ++ L LC + +P L+AI+ +E K Q L+REE + + LQ R+ +L K
Sbjct: 106 GELNLLKELCKMINEEPELKAIEDTEESKKQ--LQREESKEADRLLQERIDVLCKNLLDK 163
Query: 446 NKI-TEEQQVQRIKDA 490
I TE R+ DA
Sbjct: 164 LSIWTETDMSDRVTDA 179
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 30.3 bits (65), Expect = 0.23
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +2
Query: 242 LGQMSQIQAMA-GFVHALDRLCPLFKPYLEAIQKDKEQKMQQELKREEEERSRIELQNRV 418
+G+ S+IQ A ++ L+ L K Y + +K QK +L + E R
Sbjct: 3 VGKKSEIQVSAKSNLNFLNELIEEKKRYEDEKRKISHQKYTDKLLEANDN----ETTKRK 58
Query: 419 MLEKQKQQSNKITEEQQVQRIKD 487
+L KQK++SNK + +++ KD
Sbjct: 59 LLVKQKRKSNKEFQSNIIKKRKD 81
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 29.9 bits (64), Expect = 0.31
Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Frame = +2
Query: 320 YLEAIQKDKEQKMQQELKREEEERSRIELQNRVMLEK---QKQQSNKITEEQQV 472
Y + + KE+K+Q++ R +EER R + R+ EK Q++Q K+ E++++
Sbjct: 68 YNGSAEAGKEKKLQKQ--RAQEERIRQKEAERLKREKERQQREQEKKLREQEKI 119
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/54 (24%), Positives = 34/54 (62%)
Frame = +2
Query: 326 EAIQKDKEQKMQQELKREEEERSRIELQNRVMLEKQKQQSNKITEEQQVQRIKD 487
E ++++KE + Q+E +++ E+ +I + LEK +++ ++ E+Q+ + +D
Sbjct: 96 ERLKREKE-RQQREQEKKLREQEKIAAKKMKELEKLEKERIRLQEQQRRKEERD 148
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 28.7 bits (61), Expect = 0.71
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 323 LEAIQKDKEQKMQQ-ELKREEEERSRIELQNRVMLEKQKQQSNKITEEQQVQ 475
L A +K +++ M + ELKREEEE ++ + L + QSNK+ Q +
Sbjct: 146 LRAPKKPEKEAMNELELKREEEE---LQYALALSLSESTAQSNKVENPQSTK 194
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 28.3 bits (60), Expect = 0.94
Identities = 16/48 (33%), Positives = 31/48 (64%)
Frame = +2
Query: 326 EAIQKDKEQKMQQELKREEEERSRIELQNRVMLEKQKQQSNKITEEQQ 469
E ++K + + +Q LK +EEER + EL + EK++++ ++ EEQ+
Sbjct: 116 ELLEKKRIEAERQRLK-DEEERRKKELMEK---EKKEKERIRLIEEQK 159
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 28.3 bits (60), Expect = 0.94
Identities = 18/59 (30%), Positives = 37/59 (62%), Gaps = 6/59 (10%)
Frame = +2
Query: 344 KEQKMQQELKR------EEEERSRIELQNRVMLEKQKQQSNKITEEQQVQRIKDALNAQ 502
+EQK+Q+E +R EE+++ ++E++ LE + +++N TE+ + Q K+AL +
Sbjct: 136 EEQKIQEEFERQITDLLEEQQQLKLEIER---LEAETERANSETEQYEKQ--KEALEEE 189
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 27.9 bits (59), Expect = 1.2
Identities = 9/39 (23%), Positives = 28/39 (71%)
Frame = +2
Query: 323 LEAIQKDKEQKMQQELKREEEERSRIELQNRVMLEKQKQ 439
L+ +Q+ ++Q+ QQ+ +++++++ + + Q + ++QKQ
Sbjct: 253 LQHMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKQ 291
Score = 25.0 bits (52), Expect = 8.8
Identities = 8/37 (21%), Positives = 25/37 (67%)
Frame = +2
Query: 335 QKDKEQKMQQELKREEEERSRIELQNRVMLEKQKQQS 445
Q+ ++Q+ QQ+ +++++++ + + Q + +KQ Q+
Sbjct: 259 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKQAPQN 295
>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 217
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/77 (23%), Positives = 39/77 (50%)
Frame = +2
Query: 332 IQKDKEQKMQQELKREEEERSRIELQNRVMLEKQKQQSNKITEEQQVQRIKDALNAQTYD 511
+++++E+K E + E ++ L+N + EK+ S+ T E ++ + + + Q
Sbjct: 131 VREEQEEKTDNEDDNDVEISTQESLENNGLAEKKDDTSSLATLEDDIEGQEFSFDDQDL- 189
Query: 512 QFLQYAQQQFPGNFDQQ 562
Q LQ + Q+ + QQ
Sbjct: 190 QMLQDIEDQWLSSQKQQ 206
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +2
Query: 311 FKPYLEAIQKDKEQKMQQELKREEEERSRIELQNRVMLEKQKQQSNKITEEQQV--QRIK 484
F ++E Q+ +EQ+ + E K+ +++ + N + + ++ N EE+++ R K
Sbjct: 322 FSKFMEKNQQRREQQDKGENKKRQDDVDQATDNNTNTILEDDEKDNDEEEEEEIVNAREK 381
Query: 485 DALNAQ 502
+ LN Q
Sbjct: 382 NLLNQQ 387
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 347 EQKMQQELKREEEERSRI--ELQNRVMLEKQKQQSNKITEEQQVQR 478
EQK+ + ++ EEE +R E NR + E+++ Q I E + R
Sbjct: 783 EQKLAEAIREAEEEAARAAEEEANRELHEQEEAQKRAIEERTRAAR 828
Score = 26.6 bits (56), Expect = 2.9
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +2
Query: 377 EEEERSRIELQNRVMLEKQKQQSNKITEEQQVQRIKDALNAQTYDQFLQYAQQQFPGNFD 556
EE+ + + E + E++KQ+ ++ E + Q IKD + + QF Y + N D
Sbjct: 698 EEDAKQQAEHDREIFYEREKQRK-EVQERKHEQAIKD---KKAFAQFASYI-HAYKQNID 752
Query: 557 QQ 562
+
Sbjct: 753 DE 754
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +2
Query: 311 FKPYLEAIQKDKEQKMQQELKREEEERSRIELQNRVMLEKQKQQSNKITEEQQV--QRIK 484
F ++E Q+ +EQ+ + E K+ +++ + N + + ++ N EE+++ R K
Sbjct: 322 FSKFMEKNQQRREQQDKGENKKRQDDVDQATDNNTNTILEDDEKDNDEEEEEEIVNAREK 381
Query: 485 DALNAQ 502
+ LN Q
Sbjct: 382 NLLNQQ 387
>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 27.5 bits (58), Expect = 1.6
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +2
Query: 335 QKDKEQKMQQELKRE--EEERSRIELQNRVMLEKQKQQSNKITEEQQVQRIKDALNAQTY 508
+ ++EQK +++KR EE+ ++ Q LEKQ++ +I E + ++ K AL+
Sbjct: 90 ESEREQKSARKVKRAELEEKLAKRREQELQELEKQEKIEAEILESRLQEQRKVALDELEL 149
Query: 509 DQ 514
D+
Sbjct: 150 DR 151
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 27.1 bits (57), Expect = 2.2
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Frame = +2
Query: 344 KEQKMQQELKREEEERSRIELQ--NRVMLE----KQKQQSNKITEEQQVQRIKDALNAQT 505
+E + ++EL R EER R+E Q M E +Q + K EE QR KD+ +
Sbjct: 277 RELEKKKELLRIAEERQRLEKQATEYQMPEDYFTEQGKLDRKRKEEVLYQRYKDSNEGEQ 336
Query: 506 YDQFLQYAQQQFPGNFDQQAILIRQLXDQH 595
+ + A+QQ ++ Q I L DQ+
Sbjct: 337 NEVTMGAAEQQ---RWEAQQINKALLFDQN 363
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/67 (20%), Positives = 29/67 (43%)
Frame = +2
Query: 338 KDKEQKMQQELKREEEERSRIELQNRVMLEKQKQQSNKITEEQQVQRIKDALNAQTYDQF 517
+D+ K EE ++ R E +NR L+K+K+ ++ ++ Q
Sbjct: 282 QDRPDKRHGTYSLEEIDKQRKEFENRQRLQKEKEFQKSREAALKIHASRNTTETQVQSAR 341
Query: 518 LQYAQQQ 538
+Y Q++
Sbjct: 342 ERYLQRK 348
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +2
Query: 305 PLFKPYLEAIQKD--KEQKMQQELKREEEERSRIE 403
PL K L+ ++K+ KEQK ++ RE EE+ + E
Sbjct: 31 PLSKKALKKLEKEREKEQKRKEREAREAEEKKKRE 65
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 350 QKMQQELKREEEERSRIELQNRVMLEKQKQQSNKITEEQQVQRIK 484
QKM +E + EEE RI + + E++K+ + ++ R+K
Sbjct: 251 QKMLEEKRAREEEEQRIREEEARIAEEEKRLAEVEEARKEEARLK 295
Score = 25.8 bits (54), Expect = 5.0
Identities = 9/36 (25%), Positives = 25/36 (69%)
Frame = +2
Query: 335 QKDKEQKMQQELKREEEERSRIELQNRVMLEKQKQQ 442
+K+KE+K ++E+K + + S+ + + + + +++ QQ
Sbjct: 296 KKEKERKKKEEMKAQGKYLSKKQKEQQALAQRRLQQ 331
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = +2
Query: 341 DKEQKMQQELKREEEERSRIE---LQNRVMLEKQKQQ 442
++ +K + LK++E+ER + E Q + + +KQK+Q
Sbjct: 285 EEARKEEARLKKKEKERKKKEEMKAQGKYLSKKQKEQ 321
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 26.6 bits (56), Expect = 2.9
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +2
Query: 332 IQKDKEQKMQQELKREEEERSRIELQNRVMLEKQKQQSN 448
I+KD E ++++ ++ EEERSR R LEK+KQ +N
Sbjct: 239 IEKDPEL-LKRQAEKYEEERSRA----RRRLEKRKQLNN 272
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +3
Query: 345 RNKRCNKS*NEKKKKDLESNF 407
+N++CN++ NE+KK +SNF
Sbjct: 33 QNRKCNQASNEEKKILYKSNF 53
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 26.2 bits (55), Expect = 3.8
Identities = 16/73 (21%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +2
Query: 317 PYLEAIQKDKEQ-KMQQELKREEEERSRIELQNRV-MLEKQKQQSNKITEEQQVQRIKDA 490
PY EA ++K Q +++ +R+ E R++ Q + EK ++ ++ ++Q+
Sbjct: 263 PYTEAAAQEKSQEELELIAERKRESGRRLQAQAAIKRKEKAAERDRELATLTELQQQSLV 322
Query: 491 LNAQTYDQFLQYA 529
L+ + + + L+ A
Sbjct: 323 LSRRAFQRALEEA 335
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 239 LAKLHAYLSLSHPRHPEVVQNWDQMDR 159
L K A SL +P ++NWD M+R
Sbjct: 81 LKKASAGYSLDYPIRHGQIENWDHMER 107
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +2
Query: 326 EAIQKDKEQKMQQELKREEEERSRIELQNRVMLEKQKQQSNKITEE 463
++ +K K+++ E+EE+ EL +M KQ++ +K+ E
Sbjct: 534 KSAKKTKKRQRDTLTAEEKEEKEAKELSKMMMSNKQRKLYSKLKNE 579
>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/66 (19%), Positives = 36/66 (54%)
Frame = +2
Query: 344 KEQKMQQELKREEEERSRIELQNRVMLEKQKQQSNKITEEQQVQRIKDALNAQTYDQFLQ 523
K+Q ++ + ER + + + M+E ++Q+ ++TE + +R+ D + T ++ L
Sbjct: 144 KQQFNDRKKNAQIREREALAKREQEMIEDRRQRIKEVTENLE-KRLDDWIAKATTEEGLN 202
Query: 524 YAQQQF 541
++++
Sbjct: 203 ALREKY 208
>SPCC1183.07 |||U3 snoRNP-associated protein
Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1690
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 297 DFVHCSSHIWKLYRRTRNKRCNKS*NEKKKKDLESNFKI 413
DF+ +S +L ++TR K+ + K + D E N K+
Sbjct: 58 DFMESASGTAELSKKTRPKKKGSKKSSKSELDNEENLKV 96
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 9/46 (19%)
Frame = +2
Query: 341 DKEQKMQQELKRE---------EEERSRIELQNRVMLEKQKQQSNK 451
DK++KM++E+K + E +R+R EL+ ++ KQ+S +
Sbjct: 517 DKKEKMEREMKNKNLELADMILERDRARHELETMHRSQRDKQESTE 562
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +2
Query: 401 ELQNRVMLEKQKQQSNKITEEQQVQRIKDALNAQTYDQF 517
E+ R LE+ K+Q+NK+ E + +R+ + +Q + F
Sbjct: 339 EMLIRTHLEELKEQTNKLYEAYRTERLLSSGISQDHSVF 377
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 347 EQKMQQELKREEEERSRIELQN 412
E+KM + RE++ RS+ EL N
Sbjct: 120 EEKMLERFSREQQRRSKRELYN 141
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 332 IQKDKEQKMQQELKREEEERSRIELQNRVMLEKQKQQSNK 451
I DK K+Q + EEE+SRI ++R K++ K
Sbjct: 53 IDADKAHKIQLARLQREEEQSRILSRSRSSNNKRRTSFGK 92
>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 25.4 bits (53), Expect = 6.6
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = +2
Query: 314 KPYLEAIQKDKEQKMQQELKREEEERSRIELQNRVMLEKQKQQSNKITEEQQVQRIKDAL 493
K L+ KD+E K +E ++ EE++ + V LEK+ + TE ++ + ++L
Sbjct: 75 KDKLQQENKDQELKNIEESYKKLEEKTEHLSDDNVSLEKRVEYLE--TENTKLVKTLNSL 132
Query: 494 NAQ 502
N++
Sbjct: 133 NSE 135
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 25.0 bits (52), Expect = 8.8
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 371 KREEEERSRIELQNRVMLEKQKQQSNKITEEQQVQRI-KDALNAQTYDQ 514
K+ E + + L+NR+ EKQ+ ++ E+ + I KD + Y+Q
Sbjct: 811 KQLEFTKQKSLLENRISFEKQRVSDTRLRLERMHKFIEKDQESIDNYEQ 859
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 25.0 bits (52), Expect = 8.8
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +2
Query: 338 KDKEQKMQQELKREEEERSRIELQNRVMLEKQKQQSNKITEEQQVQRIKDAL 493
++ E+KMQ++ E+EE E + + LEK + K T + + R++ A+
Sbjct: 833 RNAERKMQRKAYGEDEEDVETEAEAKSPLEKITPE--KSTGDPTLDRVRAAV 882
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/41 (29%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 335 QKDKEQKMQQELKREEEER-SRIELQNRVMLEKQKQQSNKI 454
Q++KE MQQ+ +++++++ + ++Q+R L Q+ N+I
Sbjct: 115 QQEKEAAMQQQQQQQQQQQLYQRQMQSREALLSQQIPPNQI 155
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,522,043
Number of Sequences: 5004
Number of extensions: 52568
Number of successful extensions: 294
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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