Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_B11
         (909 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    29   0.69 
SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|...    29   0.91 
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ...    28   1.6  
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch...    28   1.6  
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    28   1.6  
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2...    28   2.1  
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    27   2.8  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    26   6.4  

>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 23/77 (29%), Positives = 37/77 (48%)
 Frame = +1

Query: 622 NRLLKRLCEKSISILEKIDNHNSVLLQKTTFFLKNETNRYLNIVERVPYYNRPTFNAKAT 801
           N   K +  KS SIL++I    S L +KT  F       +++  ++ PY N P F  +  
Sbjct: 255 NSKSKNIVNKSSSILKRILGVLSNLNEKTHHF-------FISCFKKQPY-NNPKFFRRKV 306

Query: 802 DLIMKKCPXRIINNFEK 852
           DLI K    R++  + +
Sbjct: 307 DLINKFIGQRLMETYSR 323


>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 340

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 3   HLVVSPSSCTCTDVLGNKHNKQFIVGLFSLSI*K*FNQRLYSKV 134
           HL VSP S  C     N++NK +I+ L +  + + F +++ S +
Sbjct: 163 HLTVSPESMLCLAQHANENNKPYIMNLSAPFLSQFFKEQMDSVI 206


>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 214 ALSGNIKISSHPDDDIGNLLLIDMASQNKDVHFILNAFKSTDMLYVSWAIKK--SNWLIT 387
           A S    + S    ++ +L  + + S     H  ++ F++TD+LYV + I K    W IT
Sbjct: 204 AFSVQTSLPSLGTGEVKDLFYVPLTSFLNPKHQKISRFRNTDLLYVEFNIDKIPRIWGIT 263

Query: 388 EKTYSNFIN 414
               + ++N
Sbjct: 264 AVILNMYLN 272


>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 257

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/55 (23%), Positives = 31/55 (56%)
 Frame = +1

Query: 97  FRNNSIKDFTLKLATMASTVLKGDTLGQKHKHYNQLLNDALSGNIKISSHPDDDI 261
           FR+++  +   +L+  +++V +G     + K Y+Q++  A+S +I +  +P   I
Sbjct: 76  FRSSAKLNCEFRLSPFSTSVRQGHVQTVEEKSYSQMIEAAISPSILLHLYPKSSI 130


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 769 SMERVLQYLSTYLSHFSKRTW 707
           S E V +YL ++LS F+KR W
Sbjct: 126 SAEPVAKYLKSFLSEFTKRRW 146


>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 228

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/56 (23%), Positives = 28/56 (50%)
 Frame = +1

Query: 202 LLNDALSGNIKISSHPDDDIGNLLLIDMASQNKDVHFILNAFKSTDMLYVSWAIKK 369
           ++ND+ + ++ + +HP       LLI   +    +  +L+  KSTD   V   +++
Sbjct: 162 IVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIPKLLDLIKSTDAFKVILCVQR 217


>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 778 VCCSMERVLQYLSTYLSHFSKRTWFSVKARSYG 680
           +C S E++ QY    +   S   WF+ +A S G
Sbjct: 117 ICLSQEQLEQYFVPLVQRLSTAEWFTSRASSAG 149


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = +1

Query: 250 DDDIGNLLLIDMASQNKDVHFILNA---FKSTDMLYVSWAIKKSNWLITEKTYSNFINPN 420
           +DD   L  + +A +     F+       KS +  +V    KK+N  + + TYS ++ P 
Sbjct: 748 EDDFDQLQFLTLAKRKSCKFFLFGLSLPLKSPNDSHVGTDFKKNNEPLDKLTYSQYLRPM 807

Query: 421 Y 423
           +
Sbjct: 808 F 808


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,599,789
Number of Sequences: 5004
Number of extensions: 73650
Number of successful extensions: 225
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)