Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_B11
         (909 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1509 - 34074206-34074398,34074506-34074777,34075411-340756...    30   2.9  
01_01_0008 + 34743-34939,35027-35072,35517-35668,35818-35877,365...    29   3.9  
06_01_0469 + 3322886-3323564,3324033-3324953,3325025-3325155,332...    28   8.9  
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622...    28   8.9  

>04_04_1509 -
           34074206-34074398,34074506-34074777,34075411-34075608,
           34076092-34076187,34076318-34076500,34076597-34076799,
           34076887-34077013,34077098-34077292,34077400-34077540,
           34077669-34077812,34077876-34078040,34078776-34078976,
           34079049-34079195,34079275-34079427,34079731-34079833,
           34079954-34080069,34080168-34080349,34080442-34080541,
           34081200-34081527,34081605-34081834,34081979-34082110,
           34082787-34082859,34083274-34083338
          Length = 1248

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +1

Query: 736 RYLNIVERVPYYNRPTFNAKATDLIMKKCPXRIINNFEKYAINIHMPTFAXYLKSENI 909
           ++L I+  +PY N   F+ +  D  +   P RII    K  ++   P    YL S  +
Sbjct: 454 QFLRILRTLPYGNSVFFSVRKIDDPIGLLPGRIILGINKRGVHFFRPVPKEYLHSAEL 511


>01_01_0008 +
           34743-34939,35027-35072,35517-35668,35818-35877,
           36594-36818,36892-37033,37276-37326,37434-37525,
           38319-38445,38670-38751,38939-39046,39135-39189,
           39456-39602,39703-39781,39885-40007
          Length = 561

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 26/118 (22%), Positives = 57/118 (48%), Gaps = 5/118 (4%)
 Frame = +1

Query: 103 NNSIKDFTLKLATMASTVLKGDTL---GQKHKHYNQLLNDALSGNIKISSH-PDDDIGNL 270
           +  ++   L LA  A  +L G +     +K K  +QL +   S    + +  P   + N 
Sbjct: 50  DRGLRTVLLALAMTAIKLLPGVSAYINAEKRKVVDQLQSGGTSTKSTLRTELPTVGLSNQ 109

Query: 271 LLIDMAS-QNKDVHFILNAFKSTDMLYVSWAIKKSNWLITEKTYSNFINPNYLNSDIF 441
           ++ D+ + + +DV++     K +  +Y++ +  + ++ +  K YS F + N L+ D+F
Sbjct: 110 VINDLETLKARDVNW---QGKCSGTVYIAGSESEGHFALINKAYSMFSHTNPLHQDVF 164


>06_01_0469 +
           3322886-3323564,3324033-3324953,3325025-3325155,
           3325237-3325317,3328173-3328820
          Length = 819

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 26/82 (31%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
 Frame = +1

Query: 70  LLLGCFR*VFRNNSIKDFTLKL-----ATMASTVLKGDTLGQKHKHYNQLLNDALSGNIK 234
           LL   F+ + RN S +DF         A   STVLK       HK Y     + L G   
Sbjct: 301 LLEKVFKGLRRNESEEDFRCSQTAPVRAIKHSTVLKQAAESYTHKIYKLFEAEFLDGCGA 360

Query: 235 ISSHPDDDIGNLLLIDMASQNK 300
            S H     GNLL  ++  Q +
Sbjct: 361 TSCHESSCGGNLLRFEITMQGR 382


>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
            30062391-30062464,30062547-30062629,30063044-30063147,
            30063526-30063665,30063736-30063783,30063939-30063991,
            30064178-30064262,30064346-30064412,30064496-30064606,
            30065262-30065283,30066244-30071110,30071186-30071374,
            30071463-30071577,30072329-30073388,30074247-30074694,
            30074966-30075019,30075105-30076898,30076989-30077949,
            30078271-30078384,30078459-30078613,30078934-30079026,
            30079341-30079613,30093423-30093975,30094465-30094540,
            30094619-30094718
          Length = 4025

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
 Frame = +1

Query: 370  SNWLITEKTYSNFINPNYLNSDIFPHMMTKAINKLMLHIRLHLKDEER--VEQFYRNEKV 543
            ++W IT   YS     + L + +FP     A+   +   R HL D E+  V++  RN   
Sbjct: 1809 ASWCITHANYSLSGTDSKLQNSLFP-----ALQSELSPDRFHLTDNEKSEVQEIIRNFCA 1863

Query: 544  PSDAAKWLCNCSVKFIEDNVNKHNNDNRLLKRLCEKSISILE 669
              D      +CS+         +N++   +  L E++I +LE
Sbjct: 1864 DKDGN--YVDCSIS--PTAGCSYNSEGNPIVSLIEQTICLLE 1901


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,719,239
Number of Sequences: 37544
Number of extensions: 380849
Number of successful extensions: 784
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)