Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_B11
(909 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49789| Best HMM Match : IncA (HMM E-Value=0.47) 33 0.42
SB_27385| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.42
SB_10908| Best HMM Match : Cytochrom_B562 (HMM E-Value=3.4) 33 0.42
SB_7786| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.56
SB_23275| Best HMM Match : IncA (HMM E-Value=0.43) 32 0.74
SB_7032| Best HMM Match : IncA (HMM E-Value=0.46) 31 0.97
SB_44636| Best HMM Match : IncA (HMM E-Value=0.32) 30 3.0
SB_21875| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.9
SB_6730| Best HMM Match : 7tm_1 (HMM E-Value=6.50006e-41) 29 6.9
>SB_49789| Best HMM Match : IncA (HMM E-Value=0.47)
Length = 674
Score = 32.7 bits (71), Expect = 0.42
Identities = 22/81 (27%), Positives = 40/81 (49%)
Frame = +1
Query: 550 DAAKWLCNCSVKFIEDNVNKHNNDNRLLKRLCEKSISILEKIDNHNSVLLQKTTFFLKNE 729
D + V I D V+K DN++ E+ IL ++D ++ LQ ++ +
Sbjct: 118 DQTAAMAKAKVNSIRDLVSKALKDNKISD---EEFSLILNELDKFEALKLQ-----IRQK 169
Query: 730 TNRYLNIVERVPYYNRPTFNA 792
+ ++ V+R PYY+R F+A
Sbjct: 170 SMKFTEFVKRYPYYSRFRFSA 190
>SB_27385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 456
Score = 32.7 bits (71), Expect = 0.42
Identities = 22/81 (27%), Positives = 40/81 (49%)
Frame = +1
Query: 550 DAAKWLCNCSVKFIEDNVNKHNNDNRLLKRLCEKSISILEKIDNHNSVLLQKTTFFLKNE 729
D + V I D V+K DN++ E+ IL ++D ++ LQ ++ +
Sbjct: 118 DQTAAMAKAKVNSIRDLVSKALKDNKISD---EEFSLILNELDKFEALKLQ-----IRQK 169
Query: 730 TNRYLNIVERVPYYNRPTFNA 792
+ ++ V+R PYY+R F+A
Sbjct: 170 SMKFTEFVKRYPYYSRFRFSA 190
>SB_10908| Best HMM Match : Cytochrom_B562 (HMM E-Value=3.4)
Length = 389
Score = 32.7 bits (71), Expect = 0.42
Identities = 22/81 (27%), Positives = 40/81 (49%)
Frame = +1
Query: 550 DAAKWLCNCSVKFIEDNVNKHNNDNRLLKRLCEKSISILEKIDNHNSVLLQKTTFFLKNE 729
D + V I D V+K DN++ E+ IL ++D ++ LQ ++ +
Sbjct: 17 DQTAAMAKAKVNSIRDLVSKALKDNKISD---EEFSLILNELDKFEALKLQ-----IRQK 68
Query: 730 TNRYLNIVERVPYYNRPTFNA 792
+ ++ V+R PYY+R F+A
Sbjct: 69 SMKFTEFVKRYPYYSRFRFSA 89
>SB_7786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 32.3 bits (70), Expect = 0.56
Identities = 21/76 (27%), Positives = 39/76 (51%)
Frame = +1
Query: 565 LCNCSVKFIEDNVNKHNNDNRLLKRLCEKSISILEKIDNHNSVLLQKTTFFLKNETNRYL 744
+ V I D V+K DN++ E+ IL ++D ++ LQ ++ ++ ++
Sbjct: 1 MAKAKVNSIRDLVSKALKDNKISD---EEFSLILNELDKFEALKLQ-----IRQKSMKFT 52
Query: 745 NIVERVPYYNRPTFNA 792
V+R PYY+R F+A
Sbjct: 53 EFVKRYPYYSRFRFSA 68
>SB_23275| Best HMM Match : IncA (HMM E-Value=0.43)
Length = 1176
Score = 31.9 bits (69), Expect = 0.74
Identities = 22/81 (27%), Positives = 39/81 (48%)
Frame = +1
Query: 550 DAAKWLCNCSVKFIEDNVNKHNNDNRLLKRLCEKSISILEKIDNHNSVLLQKTTFFLKNE 729
D + V I D V+K DN++ E+ IL ++D ++ LQ ++ +
Sbjct: 620 DQTAAMAKAKVNSIRDLVSKALKDNKISD---EEFSLILNELDKFEALKLQ-----IRQK 671
Query: 730 TNRYLNIVERVPYYNRPTFNA 792
++ V+R PYY+R F+A
Sbjct: 672 LMKFTEFVKRYPYYSRFRFSA 692
>SB_7032| Best HMM Match : IncA (HMM E-Value=0.46)
Length = 223
Score = 31.5 bits (68), Expect = 0.97
Identities = 21/81 (25%), Positives = 39/81 (48%)
Frame = +1
Query: 550 DAAKWLCNCSVKFIEDNVNKHNNDNRLLKRLCEKSISILEKIDNHNSVLLQKTTFFLKNE 729
D + V I D V+K DN++ E+ IL ++D ++ LQ ++ +
Sbjct: 118 DQTAAMAKAKVNSIRDLVSKALKDNKISD---EEFSLILNEVDKFEALKLQ-----IRQK 169
Query: 730 TNRYLNIVERVPYYNRPTFNA 792
+ ++ +R PYY+R F+A
Sbjct: 170 SMKFTEFAKRYPYYSRFRFSA 190
>SB_44636| Best HMM Match : IncA (HMM E-Value=0.32)
Length = 554
Score = 29.9 bits (64), Expect = 3.0
Identities = 21/81 (25%), Positives = 39/81 (48%)
Frame = +1
Query: 550 DAAKWLCNCSVKFIEDNVNKHNNDNRLLKRLCEKSISILEKIDNHNSVLLQKTTFFLKNE 729
D + V I V+K DN++ E+ IL ++D ++ LQ ++ +
Sbjct: 118 DQTAAMAKAKVNSIRGLVSKALKDNKISD---EEFSLILNELDKFEALKLQ-----IRQK 169
Query: 730 TNRYLNIVERVPYYNRPTFNA 792
+ ++ V+R PYY+R F+A
Sbjct: 170 SMKFTEFVKRYPYYSRFRFSA 190
>SB_21875| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 396
Score = 28.7 bits (61), Expect = 6.9
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -3
Query: 667 PGCLLIFH-TNVLINDYRYCVY*RYLQ*TSQNSCTAILLRR*VPFRFGKIVQHVLRP 500
P C +++H T + DY Y + S N+C +L RFG+I++ +L P
Sbjct: 266 PLCYMLYHVTGPALVDYNSKTYNFAIMFVSLNACLDPILYSLQSKRFGRIIRRMLCP 322
>SB_6730| Best HMM Match : 7tm_1 (HMM E-Value=6.50006e-41)
Length = 396
Score = 28.7 bits (61), Expect = 6.9
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -3
Query: 667 PGCLLIFH-TNVLINDYRYCVY*RYLQ*TSQNSCTAILLRR*VPFRFGKIVQHVLRP 500
P C +++H T + DY Y + S N+C +L RFG+I++ +L P
Sbjct: 266 PLCYMLYHVTGPALVDYNSKTYNFAIMFVSLNACLDPILYSLQSKRFGRIIRRMLCP 322
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,738,764
Number of Sequences: 59808
Number of extensions: 492416
Number of successful extensions: 1141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2621784220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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