Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_B11
         (909 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    25   1.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   2.2  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    24   2.2  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     24   2.2  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   8.9  

>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +1

Query: 529 RNEKVPSDAAKWLCNCSVKFIEDNVNKHNNDNRLLKRLCEKSISILEKI 675
           + E+  S   K + + S  +I  N++ +NNDN   K+L   +I+ +E+I
Sbjct: 70  KRERERSKERKIISSLSNNYIS-NISNYNNDNNYNKKL-YYNINYIEQI 116


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 854 YFSKLFMIRXGHFFIIKSVA 795
           YF  LF+I   ++FII++VA
Sbjct: 225 YFVPLFLIIYSYWFIIQAVA 244


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 854 YFSKLFMIRXGHFFIIKSVA 795
           YF  LF+I   ++FII++VA
Sbjct: 101 YFVPLFLIIYSYWFIIQAVA 120


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 728 SFFKKNVVFCKSTELWLSIFSRMLIDFSHKRF 633
           S ++   VF K++  WL  + R L DF  + F
Sbjct: 279 SHYEHQNVFVKNSGQWLREYDRELEDFDGRLF 310


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 476 ISLLIALVIICGKISE 429
           I+ LI  V+ICG ISE
Sbjct: 418 ITGLIMRVLICGSISE 433


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,223
Number of Sequences: 438
Number of extensions: 5085
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)