Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_B08
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0564 - 4176177-4178096 44 2e-04
01_01_0251 + 2058443-2058565,2058870-2059087,2060436-2060498,206... 33 0.22
11_06_0626 - 25620409-25620706,25620814-25620943,25621034-256212... 32 0.51
02_05_0116 - 25976234-25976394,25976485-25976701,25977345-259774... 32 0.51
01_03_0038 + 11862743-11862884,11863145-11863704,11863733-118637... 30 1.6
07_01_0037 + 301864-302349 30 2.1
03_05_0842 + 28110940-28111141,28111451-28111879,28112034-281128... 30 2.1
01_06_0958 - 33357689-33357997,33358135-33358284,33358371-333585... 30 2.1
01_04_0060 - 15552024-15552070,15552249-15552435,15552643-155529... 30 2.1
07_03_0788 - 21523998-21524412,21525421-21525620 29 2.7
02_01_0335 + 2386902-2386906,2386976-2387282,2387664-2387777,239... 29 2.7
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386... 29 3.6
07_03_1073 - 23760802-23761437,23761963-23762132,23762234-237624... 29 4.8
06_01_0149 + 1124427-1126805 29 4.8
08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813... 28 8.3
>03_01_0564 - 4176177-4178096
Length = 639
Score = 43.6 bits (98), Expect = 2e-04
Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 2/149 (1%)
Frame = +2
Query: 215 LFLALAVVCDKYFVPAVEKICHALNMTNDVXXXXXXXXXXXXPELFVNVIGTFIT-EGDI 391
LF L YF ++EK+ L + V P++F ++ T GD+
Sbjct: 141 LFYMLGNTAADYFCCSLEKMSALLRLPPTVAGVTLLPFGNGAPDVFASIAAFMGTGAGDV 200
Query: 392 GVGTIVGSAVF-NILAVAACCGIGAGMVVPLDWWPLTRDCLAYGITVSILICIIHDEYVQ 568
G+ +++G AVF + V A A V +D RD + +T+ L I+ V
Sbjct: 201 GLNSVLGGAVFVTCVVVGAVSLCVAEKNVQIDRRCFVRDVGFFLMTLVALSIILIVGKVT 260
Query: 569 WYEAFLLVSLYGVYICIMYYDKPIQNFAK 655
+ A + VS+Y VY ++ ++ ++ A+
Sbjct: 261 VWGAIMFVSIYVVYAFVVAANEVLRKHAR 289
>01_01_0251 +
2058443-2058565,2058870-2059087,2060436-2060498,
2060499-2060590,2060697-2060938
Length = 245
Score = 33.1 bits (72), Expect = 0.22
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 482 DWWPLTRDCLAYGITVSILICIIHDEYVQWYEAFL-LVSLYGVYICIMYYDKPIQNFAK 655
D W R+ AYGI V I++ D VQ+Y +L + LYG Y+ + N++K
Sbjct: 63 DLWDGFRESSAYGIAVPIVLNGCSDGVVQYYVPYLSAIQLYGRLRRHFYHSRVQTNWSK 121
>11_06_0626 -
25620409-25620706,25620814-25620943,25621034-25621250,
25621894-25622015,25622119-25622267,25622642-25622759,
25622840-25623185
Length = 459
Score = 31.9 bits (69), Expect = 0.51
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 374 ITEGDIGVGTIVGSAVFNILAVAACC 451
+T G +G GT+VGSA F++ + A C
Sbjct: 112 LTAGGLGPGTLVGSAAFDLFPIHAVC 137
>02_05_0116 -
25976234-25976394,25976485-25976701,25977345-25977466,
25977570-25977718,25978095-25978212,25978293-25978638
Length = 370
Score = 31.9 bits (69), Expect = 0.51
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 374 ITEGDIGVGTIVGSAVFNILAVAACC 451
+T G +G GT+VGSA F++ + A C
Sbjct: 112 LTAGGLGPGTLVGSAAFDLFPIHAVC 137
>01_03_0038 +
11862743-11862884,11863145-11863704,11863733-11863777,
11864174-11864563
Length = 378
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 30 RRPRLPASRSIQRHFKI*TPPNEMAISGTAL 122
RR R P+ R QRH PP+E A+ G L
Sbjct: 26 RRSRRPSRRKSQRHLTTVKPPSETALRGHGL 56
>07_01_0037 + 301864-302349
Length = 161
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +1
Query: 379 GG*YRSGDHSGFGCLQYISCGGLLWYWCGNGCSFGLVASY*RLSG 513
GG R G G G S GG YWCG G G+VA+ + G
Sbjct: 62 GGGCRGGGGCGMGMGMAASGGGKEGYWCGGG---GVVAAVDGMEG 103
>03_05_0842 +
28110940-28111141,28111451-28111879,28112034-28112806,
28114046-28114237,28115116-28115277,28115395-28115861,
28116339-28116384,28116639-28116647
Length = 759
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +2
Query: 2 GRPMIRTPVATSSVACVALHTTP-LQNMNTSERDGYIRNCTPPAIDDFPAGLFTE-LQRQ 175
G PM R SSV V+L++ P +Q+ + ++ D Y P +G+ Q+
Sbjct: 262 GEPMTRCSAMGSSVTAVSLYSGPTIQSKSAAQIDQYASPAQMPQCGRESSGVSGHGSQKL 321
Query: 176 HGAIVLHA 199
HG + HA
Sbjct: 322 HGVAMNHA 329
>01_06_0958 -
33357689-33357997,33358135-33358284,33358371-33358511,
33359807-33360592
Length = 461
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +2
Query: 404 IVGSAVFNILAVAACCGIG--AGMVVPLDWWPLTRDCLAYGITVSILICIIHDEYV 565
+ G A N+L C G G A V+ D L + CL G+++ ++ ++ E++
Sbjct: 112 VTGGAASNVLYNLLCTGCGRRAAAVIDYDIALLFQPCLLLGVSIGVVCNVMFPEWL 167
>01_04_0060 -
15552024-15552070,15552249-15552435,15552643-15552930,
15553027-15553221,15553330-15553431,15553588-15553842,
15553936-15553995
Length = 377
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +3
Query: 24 QWRRPRLPASRSIQRHFKI*TPPNEMAISGTALRLLSMTSLLDSSRSC 167
+WRR +P S S+ ++FK T N + I + L S+ + +D+ SC
Sbjct: 280 KWRRAEVPKSDSVVQYFKNITHANGVIIQPSGLE-CSLHASVDALSSC 326
>07_03_0788 - 21523998-21524412,21525421-21525620
Length = 204
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 94 FGGVHILKWRCMERDAGNRGRRHWRPN 14
+ G HI + D GN+ RR W+PN
Sbjct: 49 YAGRHIQFGNKVSEDGGNKSRRTWKPN 75
>02_01_0335 +
2386902-2386906,2386976-2387282,2387664-2387777,
2390252-2390320,2390416-2390715,2390829-2390930,
2391085-2391279,2391377-2391664,2391942-2392128,
2393168-2393272,2393778-2393824,2393982-2394074
Length = 603
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 24 QWRRPRLPASRSIQRHFKI*TPPNEMAISGTALRLLSMTSLLDSSRSC 167
+WRR +P S S+ ++FK T N + I L S+ + +D+ SC
Sbjct: 440 KWRRAEVPKSDSVTQYFKNITHANGVIIHPAGLE-CSLHASIDALGSC 486
>03_02_0792 +
11236785-11237337,11237711-11238261,11238446-11238628,
11238768-11238966,11239055-11239761
Length = 730
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +2
Query: 17 RTPVATSSVACVALHTTPLQNMNTSERDGYIRNCTPPAIDDFPAGLFTELQR 172
R PVA C A ++P ++ ++ D Y NC P PA L T ++R
Sbjct: 15 RPPVALDIFCCPAPPSSPKDELHLTDGDSYNYNCQPIP----PAALKTVVER 62
>07_03_1073 -
23760802-23761437,23761963-23762132,23762234-23762446,
23762531-23762819
Length = 435
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -1
Query: 145 REVIDSRRSAVPDIAISFGGVHILKWRCMER 53
RE +D R+A+PD A+++ V+ K+R + +
Sbjct: 280 RETVDRLRAALPDAALTYVDVYSAKYRLISQ 310
>06_01_0149 + 1124427-1126805
Length = 792
Score = 28.7 bits (61), Expect = 4.8
Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Frame = +2
Query: 341 PELFVNVIGTFITEGDIGVGTIVGSAVFNILAVAACCGIGAGMVVPLDWWPLTRDCLAYG 520
P +F + T + G+ G+ ++ + +L ++ +G G + W + R A+
Sbjct: 372 PVVFALCLMTIVLCGNGGIPYVINA----MLTDSSFLSVGVGTMAKCLWSAVARSSRAFY 427
Query: 521 ITVSILICIIHDEYVQWYEA-----FLLVSLYGVYICIMYYDK 634
+ + IC I V + EA FL+ + V + YY K
Sbjct: 428 TFIDVFICYILFIAVAYEEATETLVFLISDWFAVSLLHAYYGK 470
>08_02_0200 -
14179389-14180488,14180575-14180736,14180983-14181383,
14182078-14182272,14182980-14183094,14183180-14183428,
14184032-14184093,14184335-14184435,14184701-14184815,
14185211-14185302,14187619-14187777
Length = 916
Score = 27.9 bits (59), Expect = 8.3
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Frame = +2
Query: 491 PLTRDCLAYGITVSILICIIHDEYVQWYE----AFLLVSLYGVYICIM--YYDKPIQNFA 652
P D YG+ V+IL+C I V+ AFL+ L+ + +CI + P N
Sbjct: 201 PSLHDLQVYGVIVTILLCFIVFGGVKIINKVAPAFLIPVLFSL-LCIYLGVFIAPRHNAP 259
Query: 653 KGSWKWVSNMFKDN 694
KG FKDN
Sbjct: 260 KGITGLSITTFKDN 273
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,240,658
Number of Sequences: 37544
Number of extensions: 439483
Number of successful extensions: 1330
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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