Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_B06
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.03c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   3.0  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    27   3.0  
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    26   5.2  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    25   9.1  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   9.1  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    25   9.1  

>SPAPB18E9.03c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 44

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = -2

Query: 94 LFTIIKKKGLSVWGVIIYFLILKTFKRCCIS 2
          +F+I+K++ + + G+IIYFL+  +  RC  S
Sbjct: 1  MFSIVKEE-VGLPGMIIYFLLQISISRCVFS 30


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 158 WNENTFLVCISSLKILIMDLKST*PVRKLRNDLWNLEC 271
           WNEN FL+    L + +    S+  +  LR+  W L C
Sbjct: 11  WNENDFLIADMLLILKLSPRSSSDCLLDLRDRKWELVC 48


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 95  FSLNISRLVT*LLPKIGRRKKWNENTFLV--CISSLKILIMDL 217
           F L I  LV  L P +  R+ W  N F++   + SL I+I DL
Sbjct: 118 FLLAIDVLVVFLSPILRHREGWRSNAFVLWAFLMSLWIVITDL 160


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +1

Query: 499 MRISSFTLRTGSEVTLHN 552
           ++IS+ TLR+GS V+L+N
Sbjct: 300 LKISNITLRSGSVVSLYN 317


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 21/71 (29%), Positives = 36/71 (50%)
 Frame = -3

Query: 225  VDLRSIIKIFKLDMHTRNVFSFHFFLLPIFGKSYVTKRLILRLNYSLSSRKKDCLFGELL 46
            VD+ S+I    L +  R+  +F F  L +   SY+  +++L     +++ K + LF E+L
Sbjct: 1735 VDIYSVILECFLAIQPRSFPAFTFAWLSLISHSYLLPKVLL-----VNNDKINDLFSEIL 1789

Query: 45   FIF*Y*KPLKD 13
              F     LKD
Sbjct: 1790 MSFLKFLDLKD 1800


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = -3

Query: 228  QVDLRSIIKIFKLDMHTRNVFSFHFFLLPIFGKSYVTKRLILRLNYSLSSRKKDCLFGEL 49
            Q D   + +IF  D+  +  F  HF       +SY+ K L   LN  +++   DC+ G +
Sbjct: 1501 QFDNSGVARIFVQDI--KKSFYKHFLHSGFPVESYLHKVLDNHLNAEIATGTIDCIQGAM 1558

Query: 48   LFI 40
             F+
Sbjct: 1559 DFL 1561


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,872,528
Number of Sequences: 5004
Number of extensions: 56333
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)