Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_B06
         (773 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)                33   0.26 
SB_21549| Best HMM Match : SNF (HMM E-Value=2.3e-18)                   31   1.4  
SB_36152| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_31271| Best HMM Match : Extensin_2 (HMM E-Value=5.7)                28   7.3  
SB_52343| Best HMM Match : OTU (HMM E-Value=0.0036)                    28   9.6  
SB_33318| Best HMM Match : EGF (HMM E-Value=7.5e-05)                   28   9.6  
SB_24373| Best HMM Match : Skb1 (HMM E-Value=1.6e-05)                  28   9.6  

>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 40/143 (27%), Positives = 59/143 (41%), Gaps = 9/143 (6%)
 Frame = +3

Query: 270  VIVFRLTLT*-YLRFGNSIRFSVMILL*RSKFHVFFFLFSIHIRLSMRGCLCFI------ 428
            + VF L+++  YL  G    F++ + L R  +     +F++ + L    CLC I      
Sbjct: 1681 IFVFGLSVSWNYLYLGTICIFALSVSL-RYLYFCTICVFALSVSLRYL-CLCAICVFALS 1738

Query: 429  VSLCHYFLCIYYIVYLLVTFFYKYENKFVHASYRI*SDTA*FENCDXXLYXXXLXI*YRY 608
            VSL + +LC   I  L V+  Y Y   FV   Y        F       Y     + Y Y
Sbjct: 1739 VSLRYLYLCAICIFALSVSLHYLYLCVFVFLPYLCLCAIFVFALSLSLRYLCLRAMHYLY 1798

Query: 609  F--IDVFTCCDARHYLNRDTLCI 671
               I +F    + HYL   T+CI
Sbjct: 1799 LCGIRIFALSVSLHYLYPCTICI 1821


>SB_21549| Best HMM Match : SNF (HMM E-Value=2.3e-18)
          Length = 515

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 423 FIVSLCHYFLCIYYIVYLLVTFFYKY 500
           + + +  Y  CIYYIV L  TF+Y +
Sbjct: 368 YAICMISYLCCIYYIVILAWTFYYLF 393


>SB_36152| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 148 PSYLRQELRHQTTNIKTELFTIIKKK 71
           P  +R++  H   N+K+++FT +KKK
Sbjct: 8   PRLIREDEEHTAPNVKSQVFTPLKKK 33


>SB_31271| Best HMM Match : Extensin_2 (HMM E-Value=5.7)
          Length = 323

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 19/75 (25%), Positives = 32/75 (42%)
 Frame = -3

Query: 540 HFRSGTKRERTYSHTYKRT*LISTQYNKYIKNSDTERQ*SKDTHAY*DXXXXXXXXKTHE 361
           H  + T +   Y HTY  T    +Q N+Y+   +T  Q ++  H Y            H 
Sbjct: 253 HTYNTTSQATRYVHTYNTT----SQANRYVHTYNTSSQATRYVHTY--NTTSQATCHVH- 305

Query: 360 TWNATKESSLKILYY 316
           T+N T +++  +  Y
Sbjct: 306 TYNTTSQATRYVHTY 320


>SB_52343| Best HMM Match : OTU (HMM E-Value=0.0036)
          Length = 1014

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = -2

Query: 331 ENLILFPKRKYYVNVNLKTITFQVPQIVSQFANWSSRFEIHN*NFQTRYAHKECILIPL 155
           ENL  F ++ Y  N+ + T    +  +   F  W+S+  I   +F     HK   L+P+
Sbjct: 450 ENLHRFMQKSYLSNLTVITPEMAIAVLTCLFYTWNSKKSIQ--SFYKGKGHKPLPLVPV 506


>SB_33318| Best HMM Match : EGF (HMM E-Value=7.5e-05)
          Length = 220

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/66 (22%), Positives = 32/66 (48%)
 Frame = -1

Query: 560 VFKLCSVTSDPVRSVNELILILIKERN**VHNIINT*KIVTQRDNKAKTPTHTETNMNAE 381
           V K C  +   ++++  L L+ +++    +H I N+   V+++   A  P+ T T     
Sbjct: 32  VGKSCDTSKASIQTICNLKLVRVRKSKASIHTICNSNLYVSKKVRPASIPSETLTCTCPR 91

Query: 380 KKKKHM 363
           K  +H+
Sbjct: 92  KYGQHL 97


>SB_24373| Best HMM Match : Skb1 (HMM E-Value=1.6e-05)
          Length = 494

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
 Frame = -3

Query: 312 QNVSITSTLI*KLLHSKFHKSFLNLRTGQVDLRSIIKIFKLDMHTRNVF---SFHF-FLL 145
           +N++ +STL+ K     +    L   T  +    II     ++H RN F   SF F FL 
Sbjct: 352 ENLNNSSTLMRKQSSKIYIHGMLGFFTAVLFPDIIIDTRSTNIHQRNCFHWESFFFPFLK 411

Query: 144 PIFGKSYVTKRLILRLNYSL 85
           PI   S  TK+L+  L   L
Sbjct: 412 PISLDSKGTKKLLFSLKRKL 431


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,086,585
Number of Sequences: 59808
Number of extensions: 379702
Number of successful extensions: 899
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)