Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_B06
         (773 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82264-5|CAB05156.1|  404|Caenorhabditis elegans Hypothetical pr...    31   0.91 
AF068709-12|AAO26013.1|  304|Caenorhabditis elegans Serpentine r...    31   1.2  
Z68106-2|CAA92126.2|  402|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>Z82264-5|CAB05156.1|  404|Caenorhabditis elegans Hypothetical
           protein C49C3.11 protein.
          Length = 404

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +3

Query: 414 CLCFIVSLCHYFLCIYYIVYLLVTFFYKYENKFV 515
           C C IV  C + L I+++  L+ T FY Y+++++
Sbjct: 67  CRCVIVWRCLWLLIIFFVGCLIFTLFY-YDDRYI 99


>AF068709-12|AAO26013.1|  304|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 57 protein.
          Length = 304

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 33/107 (30%), Positives = 45/107 (42%), Gaps = 6/107 (5%)
 Frame = +3

Query: 222 RLDQFAN*ETICGTWNVIVFRLTLT*YLRFG-NSIRFSVMILL*RSK-FHVFF----FLF 383
           ++D   N  T   TW  I  RL       F    + F V   L  SK F +FF    FL 
Sbjct: 62  QVDLLTNMLTYANTW--IALRLEKFQSCIFMLRCVEFYVPSFLTLSKYFSLFFNNMQFLL 119

Query: 384 SIHIRLSMRGCLCFIVSLCHYFLCIYYIVYLLVTFFYKYENKFVHAS 524
           +  + +     + F +S C  F C YYI+  L    Y Y  +F+ AS
Sbjct: 120 AAVLNIHRISSILFPMS-CEKFWCRYYILVTLAFCIYSYLPRFLWAS 165


>Z68106-2|CAA92126.2|  402|Caenorhabditis elegans Hypothetical
           protein F41E7.3 protein.
          Length = 402

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 384 SIHIRLSMRGCLCFIVS--LCHYFLCIYYIVYLLVTFFYK 497
           +I+ R+SMR CL FIV   LC   L   Y + + + + ++
Sbjct: 147 NINDRMSMRSCLSFIVLIWLCSLLLVTPYAINMKLNYIHE 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,467,377
Number of Sequences: 27780
Number of extensions: 302937
Number of successful extensions: 830
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)