Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_A21
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual         28   1.1  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    26   4.5  
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      25   6.0  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    25   7.9  

>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 413

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 196 YIPRTPSLRPSVRRWTDCS 252
           Y  R PSL+P + RW +CS
Sbjct: 356 YHSRKPSLKPFISRWFNCS 374


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -3

Query: 531 LRDQFMLAIKIYKVCFLCLQQNI*FA*SNSALCICRVSDTTPNN 400
           L +QF+L+ ++   C+L +QQ    A  N++ C   +  ++P N
Sbjct: 464 LFEQFVLSRRVMGPCWLKIQQPNFDAVKNASWCRVEIGCSSPQN 507


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 123 ENPP*ILTRDVITLYFCKLRSSPRVHTSNAESEAVRP 233
           ++PP  LT D I   +   + +P VHT N  +  + P
Sbjct: 117 KSPPPSLTSDWIVDSYASDQDNPSVHTHNRTTPPIPP 153


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 258 RNRAIRPSSDGRPQTRRSR 202
           RN+A   +S+ +PQTRRS+
Sbjct: 250 RNQATITNSNSKPQTRRSK 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,764,441
Number of Sequences: 5004
Number of extensions: 29989
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)