Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_A19
(787 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi... 41 2e-04
SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6 |Schizosacch... 34 0.027
SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5 |Schi... 33 0.046
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po... 30 0.43
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 27 3.0
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 3.0
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 27 4.0
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces... 26 7.0
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 26 7.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 9.3
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 25 9.3
>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +1
Query: 607 VRALVNAHHSVVFLAHNVVGYLLMLAVMVYNVHLLLAVVFGMMLGYFLFG 756
+R ++ S +L +V Y+ ML M YN +++L + G GYFLFG
Sbjct: 200 LRIFLHFLRSCFYLVQYIVAYIAMLLAMYYNGYVILFLFCGTFFGYFLFG 249
>SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 33.9 bits (74), Expect = 0.027
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 658 VVGYLLMLAVMVYNVHLLLAVVFGMMLGY 744
V Y LML M YN +++LA+ G GY
Sbjct: 105 VFSYFLMLVAMTYNAYVILAIAIGAAFGY 133
>SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 173
Score = 33.1 bits (72), Expect = 0.046
Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 1/152 (0%)
Frame = +1
Query: 301 TAKMHM-WMWFGYDLGDFLFSGLIISTRWAFALTWIALFFVALLFEGSKVYLAKVQREAH 477
T +M M W W+ +D FL I+T FA + I +FF A+ EG L+ VQR
Sbjct: 26 TCRMSMLWNWYIHD-SCFLAKSWHINTGNKFAGSIIGIFFFAVAIEG----LSLVQRMFD 80
Query: 478 NKLYPYRSDERRNLLCDRERGAMEPTTSRNTTTAQVSRWGLIKVRALVNAHHSVVFLAHN 657
+ + + + + G + ++T V+ W + +RA A +S +L+
Sbjct: 81 RWIVAHSNGKTLS-------GPLRIFFP--SSTVHVTVWQQL-IRA---AMYSSFYLSAT 127
Query: 658 VVGYLLMLAVMVYNVHLLLAVVFGMMLGYFLF 753
+ LML VM +N + +L G +G+FLF
Sbjct: 128 I----LMLIVMSFNGYAILFGFVGAWIGFFLF 155
>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 399
Score = 29.9 bits (64), Expect = 0.43
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1
Query: 427 LFEGSKVYLAKVQREAHNKLYPYRSDERRNL 519
LF GS +Y A++ RE H K YRS R+L
Sbjct: 270 LFGGSAMYHAQLGREYHEKALKYRSLAMRSL 300
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 27.1 bits (57), Expect = 3.0
Identities = 18/73 (24%), Positives = 36/73 (49%)
Frame = +1
Query: 403 IALFFVALLFEGSKVYLAKVQREAHNKLYPYRSDERRNLLCDRERGAMEPTTSRNTTTAQ 582
+A F+ L E + L ++ ++ + P S E N +RG P TSR+ +T+
Sbjct: 1551 VADMFIELFKETTPHQLLLLETFSNGQGAPVYS-ENENTQLSHKRGGSLPETSRSISTSS 1609
Query: 583 VSRWGLIKVRALV 621
+S ++ R+++
Sbjct: 1610 ISPEKQMEFRSMI 1622
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 338 TSETSCSPV*SSARGGRSP*PGSRCSLWHSCSKVPRCT*PKCSARHTTN 484
T+ETS S + SS +P S S W S S+V T + T++
Sbjct: 929 TAETSSSAITSSVAASVTPTSSSSASSWSSSSEVDPSTAASATGSSTSS 977
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 628 HHSVVFLAHNVVGYLLMLAVMVYNVHL 708
H V+FL+H VV Y L V+ Y L
Sbjct: 724 HELVIFLSHFVVNYKKQLMVVAYESSL 750
>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -2
Query: 324 HPHVHLSGFSLLLIN*TVL-STSNCCVPFLFT 232
+PH +SGF+L +N TV+ STS ++T
Sbjct: 484 YPHSKMSGFTLPTVNRTVMPSTSATATTTVYT 515
>SPAC23D3.13c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1616
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 141 PVMIKLFTFIFKIINELDNVVGV 209
P++ KL T + +I+NE +V+GV
Sbjct: 337 PIIKKLVTSLSRIVNEKPSVIGV 359
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 9.3
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -1
Query: 718 RLATDAHCTP--LPPT*AGSRPRCAPGTRPNGARSPTPSL*LAPIC*P 581
R +T TP LPP+ S P AP + P GA + P API P
Sbjct: 411 RTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/52 (30%), Positives = 20/52 (38%)
Frame = +3
Query: 465 ARGTQQTVPI*IG*KTKPSLRQRARGHGADN*P*HHHSAGQQMGAN*SEGVG 620
+R T + I I T P L A GHG + +HHS N G
Sbjct: 289 SRDTTYQLIIAIWKNTHPFLTTLANGHGVMDASGNHHSGSSNQSINADSSAG 340
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,271,247
Number of Sequences: 5004
Number of extensions: 69734
Number of successful extensions: 173
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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