Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_A19
(787 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0896 + 22355097-22355627 42 4e-04
09_04_0273 + 16292553-16293002 41 0.001
04_03_0884 + 20543084-20543638 37 0.021
01_06_0859 + 32519587-32520039 34 0.11
03_03_0096 + 14385358-14385909 33 0.34
12_01_0698 - 5956944-5957075,5958714-5958734,5959177-5959302,595... 31 0.79
05_04_0365 + 20659846-20660301 31 0.79
03_06_0596 + 34964109-34964189,34964286-34964481,34964567-349647... 31 0.79
01_04_0124 + 16359695-16359734,16360217-16360453,16361133-163621... 30 1.8
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477... 29 3.2
01_06_0858 + 32516641-32517105 29 3.2
04_03_0509 - 16653153-16653318,16653518-16653650,16653720-166538... 28 7.3
10_01_0352 - 3870921-3871272,3871383-3871479,3871541-3871621,387... 28 9.7
>08_02_0896 + 22355097-22355627
Length = 176
Score = 42.3 bits (95), Expect = 4e-04
Identities = 24/55 (43%), Positives = 33/55 (60%)
Frame = +1
Query: 589 RWGLIKVRALVNAHHSVVFLAHNVVGYLLMLAVMVYNVHLLLAVVFGMMLGYFLF 753
RW + + RA +A + +F VGYLLMLAVM +N + LAVV G+ G+ F
Sbjct: 100 RW-MKEPRAAASAAAAALFGLSAAVGYLLMLAVMSFNGGVFLAVVAGLAAGHLAF 153
>09_04_0273 + 16292553-16293002
Length = 149
Score = 40.7 bits (91), Expect = 0.001
Identities = 37/148 (25%), Positives = 65/148 (43%)
Frame = +1
Query: 310 MHMWMWFGYDLGDFLFSGLIISTRWAFALTWIALFFVALLFEGSKVYLAKVQREAHNKLY 489
MHM ++G D+ LF G +T + L+ +AL + ++ + + +V+
Sbjct: 2 MHMTFYWGKDV-TILFDGWRTATWTGYLLSLVALLLASAFYQYLEAFRIRVK-------- 52
Query: 490 PYRSDERRNLLCDRERGAMEPTTSRNTTTAQVSRWGLIKVRALVNAHHSVVFLAHNVVGY 669
LL + ++ P S + A + R + +F ++ +GY
Sbjct: 53 ---------LLAGAKPASIPPPASSDAARAPLLLPSSAAGRWPARLATAGLFGVNSGLGY 103
Query: 670 LLMLAVMVYNVHLLLAVVFGMMLGYFLF 753
LLMLAVM +N + +AVV G+ GY F
Sbjct: 104 LLMLAVMSFNGGVFVAVVVGLAAGYLAF 131
>04_03_0884 + 20543084-20543638
Length = 184
Score = 36.7 bits (81), Expect = 0.021
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +1
Query: 634 SVVFLAHNVVGYLLMLAVMVYNVHLLLAVVFGMMLGYFL 750
+ V A + YL+MLAVM +NV +LLA V G LG+ L
Sbjct: 115 TAVHAARMGMAYLVMLAVMSFNVGVLLAAVAGHALGFLL 153
>01_06_0859 + 32519587-32520039
Length = 150
Score = 34.3 bits (75), Expect = 0.11
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +1
Query: 661 VGYLLMLAVMVYNVHLLLAVVFGMMLGYFLF 753
+ YLLMLA+M +NV +LLA V G G+ F
Sbjct: 100 LAYLLMLALMSFNVGVLLAAVAGHAAGFLAF 130
>03_03_0096 + 14385358-14385909
Length = 183
Score = 32.7 bits (71), Expect = 0.34
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +1
Query: 640 VFLAHNVVGYLLMLAVMVYNVHLLLAVVFGMMLGYFL 750
V A + YL+MLAVM +N +LLA V G G+ L
Sbjct: 108 VHAARMGLAYLVMLAVMSFNAGVLLAAVAGHAAGFLL 144
>12_01_0698 -
5956944-5957075,5958714-5958734,5959177-5959302,
5959448-5959730,5959970-5960244
Length = 278
Score = 31.5 bits (68), Expect = 0.79
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +3
Query: 582 GQQMGAN*SEGVGERAPFGRVPGAQRGRLP----AHVGGNGVQCASVASRRFRNDARILF 749
GQ++ AN G R G P A+RGR+ A G C+S+ S R D+R +F
Sbjct: 142 GQRLAANRRAEAGARR--GAPPAAERGRVERCCFAAAGRESTGCSSMPSSSQRPDSRAMF 199
Query: 750 I 752
+
Sbjct: 200 L 200
>05_04_0365 + 20659846-20660301
Length = 151
Score = 31.5 bits (68), Expect = 0.79
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 661 VGYLLMLAVMVYNVHLLLAVVFGMMLGYFLF 753
V YL+MLA+M +N + LA+V G G+ F
Sbjct: 97 VAYLIMLALMSFNGGVFLAIVAGHAAGFLAF 127
>03_06_0596 +
34964109-34964189,34964286-34964481,34964567-34964775,
34964868-34964970,34965053-34965227,34965617-34965883,
34965966-34966311,34966396-34966533,34966645-34966770,
34966866-34967078,34967171-34967462,34967559-34967755,
34967844-34968194,34968290-34968874
Length = 1092
Score = 31.5 bits (68), Expect = 0.79
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 662 SATCSCWR*WCTMCICC 712
S TC+CW WC +C CC
Sbjct: 657 SRTCNCWPKWC-ICCCC 672
>01_04_0124 + 16359695-16359734,16360217-16360453,16361133-16362104,
16362211-16362398,16362564-16363942,16364024-16365047,
16365171-16365566,16367484-16367999,16368085-16368226,
16369409-16369553,16371351-16371432,16371851-16371895,
16372018-16372140
Length = 1762
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = -1
Query: 286 YQLNCIVHFKLLR-SISIYQMQFSYRS-TPTTLSNSLIILKIKVNNFIITGALLSFET 119
Y+L C++ + S+++Y Y S PT ++N +I + +K++ + G L F+T
Sbjct: 1390 YELRCVLDWSCTTTSLTMYDWLKIYSSGNPTNIANPIIDVSVKIDIKALGGRLTFFKT 1447
>10_08_0324 +
16747117-16747330,16747432-16747559,16747675-16747744,
16747832-16747988,16748089-16748701,16749132-16749653,
16749686-16750279,16750359-16750709,16750808-16751395
Length = 1078
Score = 29.5 bits (63), Expect = 3.2
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +2
Query: 668 TCSCWR*WCTMCIC 709
TC CW WC C C
Sbjct: 609 TCDCWPSWCCCCCC 622
>01_06_0858 + 32516641-32517105
Length = 154
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 661 VGYLLMLAVMVYNVHLLLAVVFGMMLGYFLF 753
V YLLMLA+M +N + L V G G+ F
Sbjct: 102 VAYLLMLALMSFNGGVFLVAVAGHAAGFLAF 132
>04_03_0509 -
16653153-16653318,16653518-16653650,16653720-16653882,
16654488-16654595,16654986-16655100,16655581-16656083
Length = 395
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -2
Query: 741 SEHHSENDG*QQMHIVHHYRQHEQVADHVVRQEHDRMVRVHQR 613
S +H D + + H RQ+++V+DH R D V QR
Sbjct: 299 SRNHGTRDSYKDLRNGSHQRQYQKVSDHENRSIKDSESTVDQR 341
>10_01_0352 -
3870921-3871272,3871383-3871479,3871541-3871621,
3874854-3875028,3875650-3875661
Length = 238
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 585 QQMGAN*SEGVGERAPFGRVPGAQR 659
Q+ + GVG RAP GR PG R
Sbjct: 123 QESAGSDPNGVGRRAPEGRAPGCAR 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,824,975
Number of Sequences: 37544
Number of extensions: 500156
Number of successful extensions: 1359
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1356
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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