Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_A17
         (793 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    23   2.1  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    22   4.9  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    22   4.9  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   4.9  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   4.9  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   8.5  

>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 358 SLLVSLPLQIKHLLTWREVLKKLLYQLPVLMPPCLLWV 471
           S L  L  ++KH+L W+   +  ++    L    LLW+
Sbjct: 109 SKLHKLDNKLKHMLIWKSYKRTQIFITCELFFVILLWI 146


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +1

Query: 616 LHRKLLMDLLENYGVMAVVLNKTSFL 693
           +HRK+++  L   GV+ V++   + +
Sbjct: 404 VHRKIMVQSLGRVGVLVVIIGTLAII 429


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +1

Query: 616 LHRKLLMDLLENYGVMAVVLNKTSFL 693
           +HRK+++  L   GV+ V++   + +
Sbjct: 129 VHRKIMVQSLGRVGVLVVIIGTLAII 154


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 461 KHGGISTGS*YNNFFSTSLQVSRCFICSGKD 369
           KH  I        FF  S++ +R ++C  KD
Sbjct: 48  KHYNIFACDGCAGFFKRSIRRNRQYVCKAKD 78


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 461 KHGGISTGS*YNNFFSTSLQVSRCFICSGKD 369
           KH  I        FF  S++ +R ++C  KD
Sbjct: 48  KHYNIFACDGCAGFFKRSIRRNRQYVCKAKD 78


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/16 (37%), Positives = 7/16 (43%)
 Frame = +2

Query: 746 QADWNGIPRPCX*CIC 793
           +A W     PC  C C
Sbjct: 683 EAQWTSSDNPCTTCFC 698


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,423
Number of Sequences: 336
Number of extensions: 4493
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21480183
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)