Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_A16
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote...    30   1.8  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    30   1.8  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    30   1.8  
Z71258-4|CAA95783.2|  423|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AF063007-7|AAC16428.1|  659|Caenorhabditis elegans Hypothetical ...    27   9.8  

>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
            protein.
          Length = 10578

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 496  ANRSVNEYSLCRLDVLPSHTTM*STGSHLASRTDRNLVTPPTAVKNTTH 642
            AN +  E + C +DV+  H  +  TG H+    D+N V     V++  H
Sbjct: 3972 ANEAGCESTSCTIDVVDDHLGLQQTGLHVMCERDQNDVELDILVQSPNH 4020


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
            protein.
          Length = 18519

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 496  ANRSVNEYSLCRLDVLPSHTTM*STGSHLASRTDRNLVTPPTAVKNTTH 642
            AN +  E + C +DV+  H  +  TG H+    D+N V     V++  H
Sbjct: 3972 ANEAGCESTSCTIDVVDDHLGLQQTGLHVMCERDQNDVELDILVQSPNH 4020


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
            protein.
          Length = 18534

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 496  ANRSVNEYSLCRLDVLPSHTTM*STGSHLASRTDRNLVTPPTAVKNTTH 642
            AN +  E + C +DV+  H  +  TG H+    D+N V     V++  H
Sbjct: 3972 ANEAGCESTSCTIDVVDDHLGLQQTGLHVMCERDQNDVELDILVQSPNH 4020


>Z71258-4|CAA95783.2|  423|Caenorhabditis elegans Hypothetical
           protein C01H6.4 protein.
          Length = 423

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 415 FGENKANTLSHFHTL-YTNEYSFRLPINANRSVNE 516
           F +   + +SH H L Y NE+S   PI  + +VNE
Sbjct: 73  FRDELPSFMSHEHVLEYLNEFSKDFPIQFSSTVNE 107


>AF063007-7|AAC16428.1|  659|Caenorhabditis elegans Hypothetical
           protein R119.5 protein.
          Length = 659

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 180 KFLKYLTIRHLFI*KINLKTSFYFYYIFYNSGVNFNIFFRY 302
           +FLK L   + F  K+ +KT F F  I  ++ V+  IF  Y
Sbjct: 427 RFLKILEFNNFFRLKLRIKTIFNFLKIKISNCVDSEIFHFY 467


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,932,947
Number of Sequences: 27780
Number of extensions: 310880
Number of successful extensions: 656
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)