Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_A15
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual    38   0.002
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual        29   0.80 
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    27   4.3  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    27   4.3  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   5.7  
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ...    25   9.9  

>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 533

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 20/55 (36%), Positives = 32/55 (58%)
 Frame = +1

Query: 664 KESATALAKKIRNKELKSEDLVRAVVERIKEVNPIINAIAADRYEAALAEXREVD 828
           K  ATALA+ I+++++ S +LV A  +R      ++N +    YE ALA   E+D
Sbjct: 57  KYDATALAEMIKDRKVTSVELVTAFCKRAAIAQQLVNCVNELFYEEALARAAELD 111


>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +1

Query: 586 IDFFFSLYWDKRKKPIPDLESKHAILKESATA--LAKKIRNKELKSEDLVRAVVERIKEV 759
           ++F   +Y D     I  +     I  E AT   L   + N  L S D+V   ++R  +V
Sbjct: 40  VNFTTYVYPDTNSTNIFPMPKCQNITLEDATIDQLQNYMENGILTSTDIVHCYLDRYLQV 99

Query: 760 NPIINAI 780
           NP +N I
Sbjct: 100 NPYVNGI 106


>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 236 EFQSVSPVCVY*CNTQHDCVKLF 304
           + Q  SP+ VY C+   +CV+LF
Sbjct: 246 DVQRTSPILVYRCSNAVNCVQLF 268


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 607 YWDKRKKPIPDLESKHAILKESATALAKKIRNK 705
           Y  ++K+ + D+E+K A +K S  A   ++RNK
Sbjct: 121 YEQRQKQLMDDVEAKAAAVKRSPAAAFDEMRNK 153


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 628  PIPDLESKHAILKESATALAKKIRNKELKSEDLVRAVVER 747
            P PDL  KH  LK     +    R K +K+E L +A +++
Sbjct: 1155 PDPDLSKKHIKLKSLIIVVCSIERMKRMKNEWLKQAQLKQ 1194


>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 21/57 (36%), Positives = 25/57 (43%)
 Frame = -1

Query: 295 HTIVLCVASINTDWTHTLKFEH*DRXXARVKLWNYYNDCFF*AFNLVQLRILRFRKN 125
           H  + C A+I    T T+     D    R KL N  N C   A NLV  R L  R+N
Sbjct: 177 HGEIGCAAAIYDPTTDTVLAVSVDE---RSKLKNPINHCVMNAINLVAKRELSRRQN 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,969,771
Number of Sequences: 5004
Number of extensions: 54526
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)