Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_A15
         (829 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    26   0.37 
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    24   1.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   2.0  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   6.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.0  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   8.0  

>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 26.2 bits (55), Expect = 0.37
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +1

Query: 562 AKLLLDFAIDFFFSLYW 612
           +++L+DF +DF+F  +W
Sbjct: 51  SEVLMDFTLDFYFRQFW 67


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/35 (28%), Positives = 24/35 (68%)
 Frame = -2

Query: 618 LVPVQREEKVDSEIQQQLRVEYEYF*FFTHVHFSK 514
           LV  +RE++ + ++++++ +EYE +  ++H H  K
Sbjct: 44  LVQQEREQEYE-KLKRKMILEYELYIKYSHTHEKK 77


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +1

Query: 562 AKLLLDFAIDFFFSLYW 612
           +++ +DF +DF+F  +W
Sbjct: 51  SEVKMDFTLDFYFRQFW 67


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -2

Query: 678 CGTFFQDRMLAF*IWDWFLSLVPVQREEKVD 586
           CG  F+D M++F   D  + +   +++EK++
Sbjct: 655 CGLRFEDPMISFQPGDTIICINIKRQKEKIE 685


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 441 IFTVKCATGYSQL 403
           IF V CAT +SQL
Sbjct: 420 IFRVSCATEHSQL 432


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 441 IFTVKCATGYSQL 403
           IF V CAT +SQL
Sbjct: 126 IFRVSCATEHSQL 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,622
Number of Sequences: 438
Number of extensions: 3603
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)