Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_A14
         (544 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   163   7e-41
Z73427-5|CAA97803.1|  917|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AC024696-12|AAK84511.1|  316|Caenorhabditis elegans Hypothetical...    28   5.0  
AC006697-2|AAF60391.1|  316|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  163 bits (396), Expect = 7e-41
 Identities = 75/87 (86%), Positives = 80/87 (91%)
 Frame = +3

Query: 159 IKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGV 338
           I+GRLNRLP+AG GDM V +VKKGKPELRKKV+  VVIRQRK FRR+DG FIYFEDNAGV
Sbjct: 45  IRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGV 104

Query: 339 IVNNKGEMKGSAITGPVAKECADLWPR 419
           IVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 105 IVNNKGEMKGSAITGPVAKECADLWPR 131



 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 31/44 (70%), Positives = 38/44 (86%)
 Frame = +2

Query: 26  MSHLGRGGSAGAQFRXSLGLPVGAVINCADNTGANHLYVXAVQG 157
           MS  GRGG++GA+FR SLGLPVGAV+NCADNTGA +L+V +V G
Sbjct: 1   MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYG 44


>Z73427-5|CAA97803.1|  917|Caenorhabditis elegans Hypothetical
           protein F58B3.5 protein.
          Length = 917

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
 Frame = +2

Query: 38  GRGGSAGAQFRXS-----LGLPVGAVINCADNTGANHLYVXAVQGYQRSPEQTAGGRFR 199
           G+GG+A A    +     L + VG +I C  +  A+ LYV  +   + +P     G  R
Sbjct: 742 GKGGAAAAPVDDTIDVGRLDMRVGRIIKCEKHPDADALYVEQIDVGESAPRTVVSGLVR 800


>Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical
           protein T23D5.9 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 344 DYDTRIVLKVYKYSITPSERFPL 276
           DY +  V K+Y YSIT   RFP+
Sbjct: 162 DYMSEPVQKMYNYSITSLPRFPI 184


>AC024696-12|AAK84511.1|  316|Caenorhabditis elegans Hypothetical
           protein F07B7.2 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 29  SHLGRGGSAGAQFRXSLGLPVGAVINCADNTGANHLYV 142
           +H+GR  S+ A    SL    GA+ N  +   ANH  V
Sbjct: 98  THMGREKSSSATTSASLHYICGAIANIQERLAANHTTV 135


>AC006697-2|AAF60391.1|  316|Caenorhabditis elegans Hypothetical
           protein W09B7.2 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 29  SHLGRGGSAGAQFRXSLGLPVGAVINCADNTGANHLYV 142
           +H+GR  S+ A    SL    GA+ N  +   ANH  V
Sbjct: 98  THMGREKSSSATTSASLHYICGAIANIQERLAANHTTV 135


>Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical
           protein F47G4.8 protein.
          Length = 188

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 458 NVYSSDRARV*GNTRPQISTFFGYRPCDGRALHFALVI 345
           ++  S RAR+     P +  F  YRPC  R L +  ++
Sbjct: 86  SIAPSPRARLTSQCSPGLGGFGVYRPCTSRTLPYRQIL 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,141,756
Number of Sequences: 27780
Number of extensions: 200829
Number of successful extensions: 497
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)