Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_A13
(816 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0117 - 12486672-12486818,12487438-12487488,12487583-124877... 320 1e-87
10_02_0022 - 4290708-4290788,4291254-4291305,4291396-4291484,429... 295 2e-80
06_01_0262 - 1930552-1930632,1931096-1931152,1931236-1931287,193... 272 2e-73
03_02_0365 - 7816966-7817046,7817441-7817492,7817590-7817678,781... 132 6e-59
03_02_0477 - 8770905-8770985,8771164-8771361,8771939-8772025,877... 196 2e-50
07_03_0627 - 20061951-20062391,20062912-20062960,20063386-200638... 29 4.4
06_01_0598 + 4324129-4326150 29 4.4
01_01_0796 + 6190931-6192745 29 5.8
>09_03_0117 -
12486672-12486818,12487438-12487488,12487583-12487729,
12488037-12488354,12488450-12488604,12488941-12489248,
12490644-12491038
Length = 506
Score = 320 bits (785), Expect = 1e-87
Identities = 156/238 (65%), Positives = 189/238 (79%), Gaps = 1/238 (0%)
Frame = +2
Query: 104 VIKSIKARQIFDSRGNPTVEVDLVTELG-LFRAAVPSGASTGVHEALELRDNIKSEYHGK 280
V++SI+ARQI DSRGNPTVEVDLV G L R+AVPSGASTG++EALELRD + Y GK
Sbjct: 50 VVRSIRARQIVDSRGNPTVEVDLVAGDGRLHRSAVPSGASTGIYEALELRDGDGAAYGGK 109
Query: 281 GVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXXX 460
GVL A++NINE+IAP+L ++V Q ++D +ML +DGT NKSKLGANAILGVSL
Sbjct: 110 GVLNAVRNINEVIAPKLV--GVDVRNQSDVDAIMLDIDGTPNKSKLGANAILGVSLSVCR 167
Query: 461 XXXXXXNVPLYKHLADLAGNNDIVLPVPAFNVINGGSHAGNKLAMQEFMIFPTGASTFSE 640
VPLYKH+ +LAG ++V+PVPAFNVINGGSHAGN LAMQEFM+ P GAS+FSE
Sbjct: 168 AGAGAKEVPLYKHIQELAGTKELVMPVPAFNVINGGSHAGNNLAMQEFMLLPVGASSFSE 227
Query: 641 AMRMGSEVYHHLKKIIKEKFGLDSTAVGDEGGFAPNIQNNKDALYLIQDAIXKAGYAG 814
A+RMGSEVYH LK IIK K+G D+ VGDEGGFAPN+Q+N++ L L+ DAI KAGY+G
Sbjct: 228 ALRMGSEVYHALKGIIKAKYGQDACNVGDEGGFAPNVQDNREGLVLLMDAIEKAGYSG 285
>10_02_0022 -
4290708-4290788,4291254-4291305,4291396-4291484,
4291565-4291615,4291699-4291893,4292010-4292090,
4292190-4292252,4292480-4292554,4292630-4292710,
4292784-4292888,4292977-4293057,4293156-4293242,
4293322-4293369,4293923-4293987,4294109-4294172,
4294828-4294896
Length = 428
Score = 295 bits (725), Expect = 2e-80
Identities = 156/244 (63%), Positives = 184/244 (75%), Gaps = 8/244 (3%)
Frame = +2
Query: 107 IKSIKARQIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALELRDNIKSEYHGKG 283
I S+KARQIFDSRGNPTVEVD+ G F RAAVPSGASTGV+EALELRD S+Y GKG
Sbjct: 5 IVSVKARQIFDSRGNPTVEVDVCCSDGTFARAAVPSGASTGVYEALELRDG-GSDYLGKG 63
Query: 284 VLTAIKNINELIAPELTKANLEVTQQREIDELMLK-LDGTEN-----KSKLGANAILGVS 445
V A+ N+N +IAP L + T Q E+D M++ LDGT+N K KLGANAIL VS
Sbjct: 64 VSKAVDNVNSVIAPALI--GKDPTSQAELDNFMVQQLDGTKNEWGWCKQKLGANAILAVS 121
Query: 446 LXXXXXXXXXXNVPLYKHLADLAGNNDIVLPVPAFNVINGGSHAGNKLAMQ-EFMIFPTG 622
L +PLY+H+A+LAGN +VLPVPAFNVINGGSHAGNKLAMQ EFMI PTG
Sbjct: 122 LAICKAGAIIKKIPLYQHIANLAGNKQLVLPVPAFNVINGGSHAGNKLAMQAEFMILPTG 181
Query: 623 ASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDEGGFAPNIQNNKDALYLIQDAIXKA 802
A++F EAM+MG EVYH+LK +IK+K+G D+T VGDEGGFAPNIQ NK+ L L++ AI KA
Sbjct: 182 AASFKEAMKMGVEVYHNLKSVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIEKA 241
Query: 803 GYAG 814
GY G
Sbjct: 242 GYTG 245
>06_01_0262 -
1930552-1930632,1931096-1931152,1931236-1931287,
1931373-1931461,1931551-1931601,1931696-1931890,
1932015-1932095,1932205-1932267,1933045-1933119,
1933194-1933352,1933353-1933463,1933536-1933616,
1933721-1933807,1933920-1933967,1934357-1934421,
1935002-1935065,1935220-1935288
Length = 475
Score = 272 bits (667), Expect = 2e-73
Identities = 157/276 (56%), Positives = 186/276 (67%), Gaps = 36/276 (13%)
Frame = +2
Query: 95 LKMVIKSIKARQIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALELRDNIKSEY 271
+ + I+S+KARQIFDSRGNPTVEVD+ G F R AVPSGASTG++EALELRD S+Y
Sbjct: 1 MAVTIQSVKARQIFDSRGNPTVEVDVGLSDGSFARGAVPSGASTGIYEALELRDG-GSDY 59
Query: 272 HGKGVLTAIKNINELIAPELTKANLEVTQQREIDELMLK-LDGTEN-----KSKLGANAI 433
GKGVL A+ N+N +I P L + T+Q +ID M++ LDGT N K KLGANAI
Sbjct: 60 LGKGVLKAVSNVNTIIGPALI--GKDPTEQVDIDNFMVQQLDGTSNNWGWCKQKLGANAI 117
Query: 434 LGVSLXXXXXXXXXXNVPLYK---HLADLAGNNDIVLPVPAFNVINGGSHAGNKLAM--- 595
L VSL +PLY+ H+A+LAGN +VLPVPAFNVINGGSHAGNKLAM
Sbjct: 118 LAVSLAVCKAGAMVKKIPLYQKLQHIANLAGNKTLVLPVPAFNVINGGSHAGNKLAMQVK 177
Query: 596 -----------------------QEFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGL 706
QEFMI PTGAS+F EAM+MG EVYHHLK IIK+K+G
Sbjct: 178 YCLNNKTMSMHDSVIFSAHLAAVQEFMILPTGASSFKEAMKMGVEVYHHLKSIIKKKYGQ 237
Query: 707 DSTAVGDEGGFAPNIQNNKDALYLIQDAIXKAGYAG 814
D+T VGDEGGFAPNIQ NK+ L L++ AI KAGY G
Sbjct: 238 DATNVGDEGGFAPNIQENKEGLELLKAAIAKAGYTG 273
>03_02_0365 -
7816966-7817046,7817441-7817492,7817590-7817678,
7817762-7817854,7817900-7818094,7818172-7818249,
7818353-7818415,7818806-7818880,7818958-7819038,
7819329-7819409,7819516-7819602,7819682-7819729,
7820317-7820381,7820566-7820629,7821254-7821322
Length = 406
Score = 132 bits (319), Expect(2) = 6e-59
Identities = 78/137 (56%), Positives = 93/137 (67%), Gaps = 7/137 (5%)
Frame = +2
Query: 107 IKSIKARQIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALELRDNIKSEYHGKG 283
I+S+KARQIFDSRGNPTVEVD+ G F RAAVPSGASTGV+EALELRD S+Y GKG
Sbjct: 5 IQSVKARQIFDSRGNPTVEVDICCSDGTFARAAVPSGASTGVYEALELRDG-GSDYLGKG 63
Query: 284 VLTAIKNINELIAPELTKANLEVTQQREIDELML-KLDGTEN-----KSKLGANAILGVS 445
VL A+ N+N +I P L + T+Q ID M+ +LDGT+N K KLGANAIL VS
Sbjct: 64 VLKAVDNVNSIIGPAL--IGKDPTEQTVIDNFMVQQLDGTKNEWGWCKQKLGANAILAVS 121
Query: 446 LXXXXXXXXXXNVPLYK 496
L +PLY+
Sbjct: 122 LALCKAGAIIKKIPLYQ 138
Score = 113 bits (273), Expect(2) = 6e-59
Identities = 51/73 (69%), Positives = 61/73 (83%)
Frame = +2
Query: 596 QEFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDEGGFAPNIQNNKDALY 775
QEFMI PTGAS+F EAM+MG EVYH+LK +IK+K+G D+T VGDEGGFAPNIQ NK+ L
Sbjct: 138 QEFMILPTGASSFKEAMKMGVEVYHNLKSVIKKKYGQDATNVGDEGGFAPNIQENKEGLE 197
Query: 776 LIQDAIXKAGYAG 814
L++ AI KAGY G
Sbjct: 198 LLKTAIEKAGYTG 210
>03_02_0477 -
8770905-8770985,8771164-8771361,8771939-8772025,
8772094-8772179,8772270-8772368,8772431-8772551,
8773251-8773331,8773643-8773723,8773972-8774088,
8774185-8774256,8774621-8775055
Length = 485
Score = 196 bits (477), Expect = 2e-50
Identities = 98/222 (44%), Positives = 136/222 (61%)
Frame = +2
Query: 86 RSVLKMVIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKS 265
R VI S++ARQI D RG P VEV L T + RA+ + + A +RD K
Sbjct: 40 RRAAPAVITSVRARQILDGRGEPAVEVSLHTNKAVHRASAAAADAPEGAAADAVRDAEKR 99
Query: 266 EYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVS 445
+ + V A++ IN+ ++ L ++ QQ +ID+ ++ LD +K+++G N++L VS
Sbjct: 100 KLLARAVADAVRVINDKVSEALV--GMDPQQQSQIDQAIMDLDKAHHKAEIGVNSMLAVS 157
Query: 446 LXXXXXXXXXXNVPLYKHLADLAGNNDIVLPVPAFNVINGGSHAGNKLAMQEFMIFPTGA 625
+ VPLYKH+A+L G + LP+PA VINGG+HAGN L +QE MI P GA
Sbjct: 158 IAACKAGAAEKEVPLYKHIAELVGKSATTLPIPAITVINGGTHAGNSLPIQEIMILPVGA 217
Query: 626 STFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDEGGFAPNI 751
F EAM+MGSE YHHLK II EK+G +S +GD+GGFAPNI
Sbjct: 218 KNFEEAMQMGSETYHHLKDIILEKYGSNSCNIGDDGGFAPNI 259
>07_03_0627 - 20061951-20062391,20062912-20062960,20063386-20063851,
20063933-20064139,20064267-20064405,20065146-20065282,
20065414-20065657,20065808-20065969,20066049-20066167,
20066240-20066314,20066327-20066500,20066607-20066769,
20067211-20067420,20067515-20067668,20067761-20067839,
20067999-20068146,20068501-20068671,20068771-20069385
Length = 1250
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 185 GLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINELIAPE 328
GL +A + SGA + A+E D+ YHG V +++N +IA +
Sbjct: 1124 GLVKAFMDSGAKAVISSAMEPPDSQSIVYHGMEVNGSLENGKFVIADD 1171
>06_01_0598 + 4324129-4326150
Length = 673
Score = 29.1 bits (62), Expect = 4.4
Identities = 23/84 (27%), Positives = 40/84 (47%)
Frame = -3
Query: 811 SIASFXDSILNQIKSILVVLYVWCETTFITNSRRVQSKLLLNDLFQMVVHF*THPHGFTE 632
S+ + S + I + L+ +Y CE + ++RRV +L D+ G+T+
Sbjct: 248 SVIKYGLSTNSFISASLLDMYAKCEK--VEDARRVFDELEFVDIVLWTAMI----VGYTQ 301
Query: 631 GGRPCRENHEFLHGKFISSM*SSI 560
RP FLH KF+S + +S+
Sbjct: 302 NKRPLDALQLFLHKKFVSIVPNSV 325
>01_01_0796 + 6190931-6192745
Length = 604
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/75 (22%), Positives = 36/75 (48%)
Frame = +2
Query: 185 GLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQR 364
GLF+ A TG A+ + D +S++H G T ++ ++ ++ +A E
Sbjct: 29 GLFKCASDLSILTGASVAVVIEDQNRSKFHAVGTPTVQAVVDAALSSDVEEAAAEARPVA 88
Query: 365 EIDELMLKLDGTENK 409
+ ++LM ++ E +
Sbjct: 89 D-EQLMERIAPLERE 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,955,588
Number of Sequences: 37544
Number of extensions: 438501
Number of successful extensions: 982
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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